RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CFHR1Q03591 330 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 EIF3IQ13347 325 aaKnown RBP14.75□□□□□ -0.05
CLN3-213ENST00000565047 LRP8Q14114 963 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 TFDP2Q14188 446 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 PPP2R5EQ16537 467 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 KAZNQ674X7 775 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 PCSK4Q6UW60 755 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 RAD9BQ6WBX8 426 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 RAB11FIP2Q7L804 512 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 KDELC2Q7Z4H8 507 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 SNRNP27Q8WVK2 155 aaKnown RBP14.75□□□□□ -0.05
CLN3-213ENST00000565047 DPH1Q9BZG8 443 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 LACRTQ9GZZ8 138 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 CDH19Q9H159 772 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 SEMA6CQ9H3T2 930 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 SEPT10Q9P0V9 454 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 ACSL6Q9UKU0 697 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 TMPRSS11EQ9UL52 423 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 PCDHGA7Q9Y5G6 932 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 SPO11Q9Y5K1 396 aa14.75□□□□□ -0.05
CLN3-213ENST00000565047 SCN8AQ9UQD0 1980 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 PRR19A6NJB7 356 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 BTNL10A8MVZ5 291 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 TMX2-CTNND1H3BSU7 103 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 AURKAO14965 403 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 NDST3O95803 873 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 EPOP01588 193 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 HGFP14210 728 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 RBMS1P29558 406 aaKnown RBP14.74□□□□□ -0.05
CLN3-213ENST00000565047 ACTR1BP42025 376 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 GPR3P46089 330 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 FASLGP48023 281 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 ACTR1AP61163 376 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.74□□□□□ -0.05
CLN3-213ENST00000565047 BBS12Q6ZW61 710 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 MARK2Q7KZI7 788 aaKnown RBP14.74□□□□□ -0.05
CLN3-213ENST00000565047 BZW1Q7L1Q6 419 aaKnown RBP14.74□□□□□ -0.05
CLN3-213ENST00000565047 TMEM139Q8IV31 216 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 ZNF567Q8N184 647 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 SFRP1Q8N474 314 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 CCHCR1Q8TD31 782 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 TFB1MQ8WVM0 346 aaKnown RBP14.74□□□□□ -0.05
CLN3-213ENST00000565047 OXNAD1Q96HP4 312 aaPredicted RBP14.74□□□□□ -0.05
CLN3-213ENST00000565047 NAF1Q96HR8 494 aaKnown RBP14.74□□□□□ -0.05
CLN3-213ENST00000565047 TMEM74Q96NL1 305 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 FCRL5Q96RD9 977 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 GORASP1Q9BQQ3 440 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 SYNDIG1Q9H7V2 258 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 UBP1Q9NZI7 540 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 PKD2L2Q9NZM6 624 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 SHOC2Q9UQ13 582 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 ZNF711Q9Y462 761 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 PRKAB1Q9Y478 270 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 PCDHA3Q9Y5H8 950 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 UNC13CQ8NB66 2214 aa14.74□□□□□ -0.05
CLN3-213ENST00000565047 ATMQ13315 3056 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 CHUKO15111 745 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 NUAK1O60285 661 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 BPIP17213 487 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 CTNNA1P35221 906 aaKnown RBP14.73□□□□□ -0.05
CLN3-213ENST00000565047 CYLC1P35663 651 aaPredicted RBP14.73□□□□□ -0.05
CLN3-213ENST00000565047 PCSK7Q16549 785 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 CLPPQ16740 277 aaPredicted RBP14.73□□□□□ -0.05
CLN3-213ENST00000565047 ADGRG6Q86SQ4 1221 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 GALNT13Q8IUC8 556 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 TMTC1Q8IUR5 882 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 FBXO39Q8N4B4 442 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 LRRC57Q8N9N7 239 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 P3H4Q92791 437 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 MRGPRX2Q96LB1 330 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 QKIQ96PU8 341 aaKnown RBP eCLIP14.73□□□□□ -0.05
CLN3-213ENST00000565047 NUDT22Q9BRQ3 303 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 RMI1Q9H9A7 625 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 RDH14Q9HBH5 336 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 EPB41L5Q9HCM4 733 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 ATXN10Q9UBB4 475 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 TBC1D29Q9UFV1 150 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 EFR3BQ9Y2G0 817 aa14.73□□□□□ -0.05
CLN3-213ENST00000565047 IGHV1OR21-1A0A087WYE8 117 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 NVLO15381 856 aaKnown RBP14.72□□□□□ -0.05
CLN3-213ENST00000565047 PJA2O43164 708 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 EFSO43281 561 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 MTSS1O43312 755 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 PMPCBO75439 489 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 CPNE6O95741 557 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 ZNF8P17098 575 aaPredicted RBP14.72□□□□□ -0.05
CLN3-213ENST00000565047 NFKB1P19838 968 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 ETV5P41161 510 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 CLCNKAP51800 687 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 WNT3AP56704 352 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 CLN3Q13286 438 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 PEX6Q13608 980 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 C16orf72Q14CZ0 275 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 NOMO1Q15155 1222 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 SPA17Q15506 151 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 ZNF648Q5T619 568 aaPredicted RBP14.72□□□□□ -0.05
CLN3-213ENST00000565047 PDPK2PQ6A1A2 396 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 IYDQ6PHW0 289 aa14.72□□□□□ -0.05
CLN3-213ENST00000565047 CHST15Q7LFX5 561 aaPredicted RBP14.72□□□□□ -0.05
CLN3-213ENST00000565047 DAAM2Q86T65 1068 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms