RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ARHGAP10A1A4S6 786 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 C21orf140B9A014 251 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 PSMD11O00231 422 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 DFFAO00273 331 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 DAPK3O43293 454 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 KRT86O43790 486 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 SPAG6O75602 509 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 ACP5P13686 325 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 TYRP1P17643 537 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 LHCGRP22888 699 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 MMP8P22894 467 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 RFC1P35251 1148 aaPredicted RBP7.25□□□□□ -1.25
VPS4A-203ENST00000564399 RPS18P62269 152 aaKnown RBP7.25□□□□□ -1.25
VPS4A-203ENST00000564399 RPS15P62841 145 aaKnown RBP7.25□□□□□ -1.25
VPS4A-203ENST00000564399 ELOAQ14241 798 aaKnown RBP7.25□□□□□ -1.25
VPS4A-203ENST00000564399 ZNF235Q14590 738 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 ZRANB3Q5FWF4 1079 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 WDR59Q6PJI9 974 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 ADAMTSL4Q6UY14 1074 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 TSPAN33Q86UF1 283 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 PPP1R3BQ86XI6 285 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 RHOT1Q8IXI2 618 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 SLC34A3Q8N130 599 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 AVL9Q8NBF6 648 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 SLC30A5Q8TAD4 765 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 SCAMP4Q969E2 229 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 MARVELD3Q96A59 401 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 C19orf60Q96EN9 201 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 NSMCE3Q96MG7 304 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 HERPUD2Q9BSE4 406 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 SELENOOQ9BVL4 669 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 ABCG8Q9H221 673 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 MLXIPLQ9NP71 852 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 CPNE7Q9UBL6 633 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 TBC1D29Q9UFV1 150 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 FZD10Q9ULW2 581 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 PHTF1Q9UMS5 762 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 KCNK6Q9Y257 313 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 PCDHGB7Q9Y5F8 929 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 FHOD1Q9Y613 1164 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 CROCCQ5TZA2 2017 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 CCDC88CQ9P219 2028 aa7.25□□□□□ -1.25
VPS4A-203ENST00000564399 MN1Q10571 1320 aaPredicted RBP7.25□□□□□ -1.25
VPS4A-203ENST00000564399 KIR2DS5A0A0G2JLQ3 304 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 A0A0G2JNG1 304 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 A0A0U1RQS6 177 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 ANKRD62A6NC57 917 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 ANKUB1A6NFN9 424 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 NPIPB15A6NHN6 443 aaPredicted RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 LILRA5A6NI73 299 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 A6NL46 340 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 OR5K4A6NMS3 321 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 KIR2DS3K7RE56 304 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 EEF2KO00418 725 aaKnown RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 PES1O00541 588 aaKnown RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 CCP110O43303 1012 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 HNRNPRO43390 633 aaKnown RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 HTRA2O43464 458 aaPredicted RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 KIF1CO43896 1103 aaKnown RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 SOCS5O75159 536 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 C9P02748 559 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 ATP1A1P05023 1023 aaKnown RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 PYGLP06737 847 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 FGF5P12034 268 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 F3P13726 295 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 CTPS1P17812 591 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 TNFAIP3P21580 790 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 GRNP28799 593 aaKnown RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 PTPN4P29074 926 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 PDE1BQ01064 536 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 DPTQ07507 201 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 IL10RBQ08334 325 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 RFTN1Q14699 578 aaPredicted RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 LBRQ14739 615 aaKnown RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 KIR2DS5Q14953 304 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 PTPRRQ15256 657 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 UGT8Q16880 541 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 TPD52L1Q16890 204 aaPredicted RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 CACHD1Q5VU97 1274 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 PAPD7Q5XG87 772 aaKnown RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 SLC6A19Q695T7 634 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 CYB5D1Q6P9G0 228 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 FAM199XQ6PEV8 388 aaPredicted RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 ARHGAP36Q6ZRI8 547 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 RFLNAQ6ZTI6 216 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 USP45Q70EL2 814 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 TECPR1Q7Z6L1 1165 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 SYVN1Q86TM6 617 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 TRIM48Q8IWZ4 208 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 CBARPQ8N350 705 aaPredicted RBP7.24□□□□□ -1.25
VPS4A-203ENST00000564399 Q8NA96 180 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 EXD1Q8NHP7 514 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 EPS8L1Q8TE68 723 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 SLC20A1Q8WUM9 679 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 PNPLA2Q96AD5 504 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 SCRN2Q96FV2 425 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 PSKH2Q96QS6 385 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 RUFY1Q96T51 708 aa7.24□□□□□ -1.25
VPS4A-203ENST00000564399 GPR87Q9BY21 358 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms