RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 F5H423 210 aaPredicted RBP13.29□□□□□ -0.28
CLK3-213ENST00000563842 ZW10O43264 779 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 SLC25A14O95258 325 aaPredicted RBP13.29□□□□□ -0.28
CLK3-213ENST00000563842 MT-CO3P00414 261 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 GPR89BP0CG08 455 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 MYF5P13349 255 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 PSMB4P28070 264 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 ACTN2P35609 894 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 PDE1BQ01064 536 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 TCEA2Q15560 299 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 P3H1Q32P28 736 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 ALS2CLQ60I27 953 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 RANBP10Q6VN20 620 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 GLT6D1Q7Z4J2 308 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 SLC13A5Q86YT5 568 aaPredicted RBP13.29□□□□□ -0.28
CLK3-213ENST00000563842 KDF1Q8NAX2 398 aaPredicted RBP13.29□□□□□ -0.28
CLK3-213ENST00000563842 GPR26Q8NDV2 337 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 GPR156Q8NFN8 814 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 SLC35B2Q8TB61 432 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 CCDC110Q8TBZ0 833 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 DTX3LQ8TDB6 740 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 BLOC1S5Q8TDH9 187 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 GRAMD1AQ96CP6 724 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 EID2BQ96D98 161 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 DEPDC7Q96QD5 511 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 FICDQ9BVA6 458 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 SUDS3Q9H7L9 328 aaPredicted RBP13.29□□□□□ -0.28
CLK3-213ENST00000563842 TMEM98Q9Y2Y6 226 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 PKP3Q9Y446 797 aa13.29□□□□□ -0.28
CLK3-213ENST00000563842 SETXQ7Z333 2677 aaKnown RBP13.29□□□□□ -0.28
CLK3-213ENST00000563842 ZNF106Q9H2Y7 1883 aaKnown RBP13.29□□□□□ -0.28
CLK3-213ENST00000563842 FAM149AA5PLN7 773 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 TRABD2BA6NFA1 517 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 C2orf81A6NN90 581 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 FADS2P1A8MWK0 482 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 TCEA3O75764 348 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 AGTP01019 485 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 PNLIPP16233 465 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 GLB1P16278 677 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 BPIP17213 487 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 ADCY8P40145 1251 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 CHRNA4P43681 627 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 POLD2P49005 469 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 CTBSQ01459 385 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 TARDBPQ13148 414 aaKnown RBP eCLIP13.28□□□□□ -0.28
CLK3-213ENST00000563842 C14orf28Q4W4Y0 310 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 PYCR3Q53H96 274 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 KCTD16Q68DU8 428 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 NYAP1Q6ZVC0 841 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 TRIM74Q86UV6 250 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 PHYKPLQ8IUZ5 450 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 DCBLD1Q8N8Z6 715 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 FAM71DQ8N9W8 422 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 KYQ8NBH2 561 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 GLYATL1Q969I3 302 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 NXPE2Q96DL1 559 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 VPS35Q96QK1 796 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 NRSN2Q9GZP1 204 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 CCDC86Q9H6F5 360 aaKnown RBP13.28□□□□□ -0.28
CLK3-213ENST00000563842 TRIM39Q9HCM9 518 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 IL17CQ9P0M4 197 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 TAAR2Q9P1P5 351 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 ZNHIT2Q9UHR6 403 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 CNOT6Q9ULM6 557 aaKnown RBP13.28□□□□□ -0.28
CLK3-213ENST00000563842 R3HDM2Q9Y2K5 976 aaKnown RBP13.28□□□□□ -0.28
CLK3-213ENST00000563842 SPO11Q9Y5K1 396 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 AKAP13Q12802 2813 aa13.28□□□□□ -0.28
CLK3-213ENST00000563842 KIF26BQ2KJY2 2108 aa13.27□□□□□ -0.28
CLK3-213ENST00000563842 IGF2RP11717 2491 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 B4DGG1 531 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 AURKAO14965 403 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 STX7O15400 261 aaKnown RBP13.27□□□□□ -0.29
CLK3-213ENST00000563842 ZSCAN12O43309 604 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 NUDT21O43809 227 aaKnown RBP13.27□□□□□ -0.29
CLK3-213ENST00000563842 VEGFDO43915 354 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 CRTAMO95727 393 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 FUCA1P04066 466 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 ATP1A1P05023 1023 aaKnown RBP13.27□□□□□ -0.29
CLK3-213ENST00000563842 LPOP22079 712 aaPredicted RBP13.27□□□□□ -0.29
CLK3-213ENST00000563842 MSNP26038 577 aaKnown RBP13.27□□□□□ -0.29
CLK3-213ENST00000563842 ADRA1AP35348 466 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 SPAM1P38567 509 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 ACTR1BP42025 376 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 ACTR1AP61163 376 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 BIRC2Q13490 618 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 CAMK2BQ13554 666 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 ITGA9Q13797 1035 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 TAF1AQ15573 450 aaPredicted RBP13.27□□□□□ -0.29
CLK3-213ENST00000563842 CDCP2Q5VXM1 449 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 MARK2Q7KZI7 788 aaKnown RBP13.27□□□□□ -0.29
CLK3-213ENST00000563842 NRROSQ86YC3 692 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 KLHDC8BQ8IXV7 354 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 TTC30BQ8N4P2 665 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 CCL4L1Q8NHW4 92 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 BRSK1Q8TDC3 778 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 ZDHHC1Q8WTX9 485 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 ZCCHC14Q8WYQ9 949 aaKnown RBP13.27□□□□□ -0.29
CLK3-213ENST00000563842 C19orf43Q9BQ61 176 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 TBL1YQ9BQ87 522 aa13.27□□□□□ -0.29
CLK3-213ENST00000563842 CCDC3Q9BQI4 270 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms