RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 SHOC2Q9UQ13 582 aa16.72■□□□□ 0.27
CLK3-210ENST00000563112 PLEKHM1Q9Y4G2 1056 aa16.72■□□□□ 0.27
CLK3-210ENST00000563112 SOWAHDA6NJG2 315 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 HACD1B0YJ81 288 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 MT-CYBP00156 380 aaPredicted RBP16.71■□□□□ 0.27
CLK3-210ENST00000563112 ATP1A1P05023 1023 aaKnown RBP16.71■□□□□ 0.27
CLK3-210ENST00000563112 ITGA2BP08514 1039 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 ALDH4A1P30038 563 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 GPR3P46089 330 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 UCNP55089 124 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 B4GALNT1Q00973 533 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 TLE3Q04726 772 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 PPP2R5EQ16537 467 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 CLPPQ16740 277 aaPredicted RBP16.71■□□□□ 0.27
CLK3-210ENST00000563112 AMZ1Q400G9 498 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 MAP9Q49MG5 647 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 ZNF569Q5MCW4 686 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 FAM182AQ5T1J6 154 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 PID1Q7Z2X4 250 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 TMC3Q7Z5M5 1100 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 PIM3Q86V86 326 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 NAGSQ8N159 534 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 TMEM159Q96B96 161 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 TADA1Q96BN2 335 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 CRELD1Q96HD1 420 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 PRR11Q96HE9 360 aaPredicted RBP16.71■□□□□ 0.27
CLK3-210ENST00000563112 FERMT1Q9BQL6 677 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 ZSCAN5AQ9BUG6 496 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 AKAP7Q9P0M2 348 aaPredicted RBP16.71■□□□□ 0.27
CLK3-210ENST00000563112 KLHL8Q9P2G9 620 aaPredicted RBP16.71■□□□□ 0.27
CLK3-210ENST00000563112 CNOT6Q9ULM6 557 aaKnown RBP16.71■□□□□ 0.27
CLK3-210ENST00000563112 ZNF711Q9Y462 761 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 ST14Q9Y5Y6 855 aa16.71■□□□□ 0.27
CLK3-210ENST00000563112 ATRXP46100 2492 aa16.71■□□□□ 0.26
CLK3-210ENST00000563112 FADS2P1A8MWK0 482 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 KLK10O43240 276 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 B4GAT1O43505 415 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 CPNE6O95741 557 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 SLC4A1P02730 911 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 PIRTP0C851 137 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 JMJD7P0C870 316 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 NFKB1P19838 968 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 UGT1A5P35504 534 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 CETN2P41208 172 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 MARCKSL1P49006 195 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 OR1D5P58170 312 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 DCDC1P59894 354 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 COPS2P61201 443 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 ZFP36L1Q07352 338 aaKnown RBP16.7■□□□□ 0.26
CLK3-210ENST00000563112 WASHC5Q12768 1159 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 PDPK2PQ6A1A2 396 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 BBS12Q6ZW61 710 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 CHST15Q7LFX5 561 aaPredicted RBP16.7■□□□□ 0.26
CLK3-210ENST00000563112 ZNF438Q7Z4V0 828 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 TRAM1L1Q8N609 369 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 HTR3CQ8WXA8 447 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 HAUS1Q96CS2 278 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 FCRL3Q96P31 734 aaPredicted RBP16.7■□□□□ 0.26
CLK3-210ENST00000563112 HEMGNQ9BXL5 484 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 PRORYQ9H606 182 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 UBP1Q9NZI7 540 aa16.7■□□□□ 0.26
CLK3-210ENST00000563112 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.7■□□□□ 0.26
CLK3-210ENST00000563112 OAS3Q9Y6K5 1087 aaKnown RBP16.7■□□□□ 0.26
CLK3-210ENST00000563112 PMS2P1A4D2B8 440 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 EIF4E1BA6NMX2 242 aaKnown RBP16.69■□□□□ 0.26
CLK3-210ENST00000563112 CDRT15L2A8MXV6 281 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 DNAJC6O75061 913 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 SLC25A14O95258 325 aaPredicted RBP16.69■□□□□ 0.26
CLK3-210ENST00000563112 EPOP01588 193 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 FECHP22830 423 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 ADCY2Q08462 1091 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 XRCC4Q13426 336 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 NR1D2Q14995 579 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 PHF19Q5T6S3 580 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 ALS2CLQ60I27 953 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 USP53Q70EK8 1073 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 GPR155Q7Z3F1 870 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 CLEC14AQ86T13 490 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 JAMLQ86YT9 394 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 GPR26Q8NDV2 337 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 PATE1Q8WXA2 126 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 KRT35Q92764 455 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 QKIQ96PU8 341 aaKnown RBP eCLIP16.69■□□□□ 0.26
CLK3-210ENST00000563112 CMKLR1Q99788 373 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 CARD9Q9H257 536 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 STN1Q9H668 368 aaKnown RBP16.69■□□□□ 0.26
CLK3-210ENST00000563112 NFKBIL1Q9UBC1 381 aaPredicted RBP16.69■□□□□ 0.26
CLK3-210ENST00000563112 TRHDEQ9UKU6 1024 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 PRKAB1Q9Y478 270 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 LOXL2Q9Y4K0 774 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 PCDHGA7Q9Y5G6 932 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 PCDHA3Q9Y5H8 950 aa16.69■□□□□ 0.26
CLK3-210ENST00000563112 ZFC3H1O60293 1989 aaKnown RBP16.68■□□□□ 0.26
CLK3-210ENST00000563112 CCDC66A2RUB6 948 aa16.68■□□□□ 0.26
CLK3-210ENST00000563112 BTNL10A8MVZ5 291 aa16.68■□□□□ 0.26
CLK3-210ENST00000563112 H7C0C1 242 aa16.68■□□□□ 0.26
CLK3-210ENST00000563112 APOC4-APOC2K7ER74 178 aa16.68■□□□□ 0.26
CLK3-210ENST00000563112 GRID2O43424 1007 aa16.68■□□□□ 0.26
CLK3-210ENST00000563112 NUAK1O60285 661 aa16.68■□□□□ 0.26
CLK3-210ENST00000563112 APOC2P02655 101 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms