RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CDH19Q9H159 772 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 SAE1Q9UBE0 346 aaPredicted RBP10.15□□□□□ -0.78
LDLR-214ENST00000560628 DNPEPQ9ULA0 475 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 SHOC2Q9UQ13 582 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 LOC400499M0QZD8 3231 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 BPTFQ12830 3046 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 IGHV5-10-1A0A0J9YXX1 117 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 C9orf172C9J069 976 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 ERVH48-1M5A8F1 160 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 ZW10O43264 779 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 SNX2O60749 519 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 DNAJC6O75061 913 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 MTA2O94776 668 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 SLC4A1P02730 911 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 PYGLP06737 847 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 COMTP21964 271 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 NOP2P46087 812 aaKnown RBP10.14□□□□□ -0.79
LDLR-214ENST00000560628 GPR3P46089 330 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 CFHR1Q03591 330 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 PEX6Q13608 980 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 LY6DQ14210 128 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 PDK1Q15118 436 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 ALS2CLQ60I27 953 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 MFSD7Q6UXD7 560 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 NT5DC3Q86UY8 548 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 ZNF843Q8N446 348 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 LSM14AQ8ND56 463 aaKnown RBP10.14□□□□□ -0.79
LDLR-214ENST00000560628 SPATA22Q8NHS9 363 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 TMEM159Q96B96 161 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 EID2BQ96D98 161 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 IMP4Q96G21 291 aaKnown RBP10.14□□□□□ -0.79
LDLR-214ENST00000560628 CCDC74BQ96LY2 380 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 LYSMD1Q96S90 227 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 KCNK4Q9NYG8 393 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 PKD2L2Q9NZM6 624 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 FOXJ2Q9P0K8 574 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 AKAP7Q9P0M2 348 aaPredicted RBP10.14□□□□□ -0.79
LDLR-214ENST00000560628 TMEM9Q9P0T7 183 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 KCNK6Q9Y257 313 aa10.14□□□□□ -0.79
LDLR-214ENST00000560628 BAHCC1Q9P281 2608 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 IGHV1OR21-1A0A087WYE8 117 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 ZNF487B1APH4 448 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 AKR1B15C9JRZ8 316 aaPredicted RBP10.13□□□□□ -0.79
LDLR-214ENST00000560628 SPOPO43791 374 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 PMPCBO75439 489 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 MT-CYBP00156 380 aaPredicted RBP10.13□□□□□ -0.79
LDLR-214ENST00000560628 ACP5P13686 325 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 ZFXP17010 805 aaPredicted RBP10.13□□□□□ -0.79
LDLR-214ENST00000560628 SLC1A1P43005 524 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 MAGEA1P43355 309 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 LIMK2P53671 638 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 NFATC2Q13469 925 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 NR1D2Q14995 579 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 SNAP47Q5SQN1 464 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 HENMT1Q5T8I9 393 aaKnown RBP10.13□□□□□ -0.79
LDLR-214ENST00000560628 LRRC38Q5VT99 294 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 KAZNQ674X7 775 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 VASH2Q86V25 355 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 RHOT1Q8IXI2 618 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 GPR26Q8NDV2 337 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 SLC37A2Q8TED4 501 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 SNRNP27Q8WVK2 155 aaKnown RBP10.13□□□□□ -0.79
LDLR-214ENST00000560628 JPH3Q8WXH2 748 aaPredicted RBP10.13□□□□□ -0.79
LDLR-214ENST00000560628 TTC9Q92623 222 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 TRIB3Q96RU7 358 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 SLC38A3Q99624 504 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 SPATA16Q9BXB7 569 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 GPR63Q9BZJ6 419 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 SEMA4CQ9C0C4 833 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 SLC25A51Q9H1U9 297 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 GOLPH3Q9H4A6 298 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 ZFYVE1Q9HBF4 777 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 GLOD4Q9HC38 313 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 DDX56Q9NY93 547 aaKnown RBP10.13□□□□□ -0.79
LDLR-214ENST00000560628 UBP1Q9NZI7 540 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 ATXN10Q9UBB4 475 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 TBC1D29Q9UFV1 150 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 TFR2Q9UP52 801 aa10.13□□□□□ -0.79
LDLR-214ENST00000560628 RGSL1A5PLK6 1076 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 A8MU76 341 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 F5H423 210 aaPredicted RBP10.12□□□□□ -0.79
LDLR-214ENST00000560628 PPP1R12AO14974 1030 aaPredicted RBP10.12□□□□□ -0.79
LDLR-214ENST00000560628 GRID2O43424 1007 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 CST8O60676 142 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 SLC25A14O95258 325 aaPredicted RBP10.12□□□□□ -0.79
LDLR-214ENST00000560628 ZIC2O95409 532 aaPredicted RBP10.12□□□□□ -0.79
LDLR-214ENST00000560628 LIPCP11150 499 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 FGF3P11487 239 aaPredicted RBP10.12□□□□□ -0.79
LDLR-214ENST00000560628 PECAM1P16284 738 aaPredicted RBP10.12□□□□□ -0.79
LDLR-214ENST00000560628 ZNF8P17098 575 aaPredicted RBP10.12□□□□□ -0.79
LDLR-214ENST00000560628 PTPN3P26045 913 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 CSF2RBP32927 897 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 CDKN2BP42772 138 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 CDK18Q07002 472 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 TBX2Q13207 712 aaPredicted RBP10.12□□□□□ -0.79
LDLR-214ENST00000560628 LRP8Q14114 963 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 TEX44Q53QW1 395 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 MANEAQ5SRI9 462 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 TMEM164Q5U3C3 297 aa10.12□□□□□ -0.79
LDLR-214ENST00000560628 IYDQ6PHW0 289 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms