RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 UGT1A5P35504 534 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 SHBQ15464 509 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 ZNF423Q2M1K9 1284 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 HLA-BQ31612 363 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 ZNF542PQ5EBM4 170 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 CES3Q6UWW8 571 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 ZDHHC24Q6UX98 284 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 DTX3LQ8TDB6 740 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 SEC14L1Q92503 715 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 SKA1Q96BD8 255 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 PDXPQ96GD0 296 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 CDKN2AIPNLQ96HQ2 116 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 TBATAQ96M53 351 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 WDR92Q96MX6 357 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 EDEM2Q9BV94 578 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 KIFC1Q9BW19 673 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 GTPBP2Q9BX10 602 aaKnown RBP21.62■■□□□ 1.05
SNX1-210ENST00000560260 FRMD8Q9BZ67 464 aaPredicted RBP21.62■■□□□ 1.05
SNX1-210ENST00000560260 UGT1A7Q9HAW7 530 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 UGT1A10Q9HAW8 530 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 UGT1A8Q9HAW9 530 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 PHPT1Q9NRX4 125 aaPredicted RBP21.62■■□□□ 1.05
SNX1-210ENST00000560260 TREX1Q9NSU2 369 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 RIMKLBQ9ULI2 386 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 SOX13Q9UN79 622 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 UTP11Q9Y3A2 253 aaKnown RBP21.62■■□□□ 1.05
SNX1-210ENST00000560260 GVINP1Q7Z2Y8 2422 aa21.62■■□□□ 1.05
SNX1-210ENST00000560260 OR51F1A6NGY5 319 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 CACNB4O00305 520 aaPredicted RBP21.61■■□□□ 1.05
SNX1-210ENST00000560260 GDF9O60383 454 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 MAGEC1O60732 1142 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 SRP72O76094 671 aaKnown RBP21.61■■□□□ 1.05
SNX1-210ENST00000560260 PYGLP06737 847 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 SYPP08247 313 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 MC4RP32245 332 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 PLA2G5P39877 138 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 THOP1P52888 689 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 DHX9Q08211 1270 aaKnown RBP21.61■■□□□ 1.05
SNX1-210ENST00000560260 KHDC1Q4VXA5 237 aaKnown RBP21.61■■□□□ 1.05
SNX1-210ENST00000560260 ZNF648Q5T619 568 aaPredicted RBP21.61■■□□□ 1.05
SNX1-210ENST00000560260 PDPK2PQ6A1A2 396 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 PARGQ86W56 976 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 DCP2Q8IU60 420 aaKnown RBP21.61■■□□□ 1.05
SNX1-210ENST00000560260 MINDY1Q8N5J2 469 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 OR1E3Q8WZA6 343 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 GLYATL1Q969I3 302 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 HIC2Q96JB3 615 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 ZDHHC5Q9C0B5 715 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 TCEAL2Q9H3H9 227 aaPredicted RBP21.61■■□□□ 1.05
SNX1-210ENST00000560260 GAREM1Q9H706 876 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 MRM3Q9HC36 420 aaKnown RBP21.61■■□□□ 1.05
SNX1-210ENST00000560260 FAM186AA6NE01 2351 aa21.61■■□□□ 1.05
SNX1-210ENST00000560260 CCDC162PA2VCL2 907 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 CDX4O14627 284 aaPredicted RBP21.6■■□□□ 1.05
SNX1-210ENST00000560260 FUCA1P04066 466 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 HADHAP40939 763 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 POLD2P49005 469 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 GUCY2DQ02846 1103 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 ALG11Q2TAA5 492 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 DOK6Q6PKX4 331 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 ENPP7Q6UWV6 458 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 IGDCC3Q8IVU1 814 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 RBFAQ8N0V3 343 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 BTN2A2Q8WVV5 523 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 HDAC10Q969S8 669 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 MFSD3Q96ES6 412 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 CCDC97Q96F63 343 aaPredicted RBP21.6■■□□□ 1.05
SNX1-210ENST00000560260 VPS35Q96QK1 796 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 ELF4Q99607 663 aaPredicted RBP21.6■■□□□ 1.05
SNX1-210ENST00000560260 ERVMER34-1Q9H9K5 563 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 MRPL40Q9NQ50 206 aaKnown RBP21.6■■□□□ 1.05
SNX1-210ENST00000560260 APPL1Q9UKG1 709 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 TMEM98Q9Y2Y6 226 aa21.6■■□□□ 1.05
SNX1-210ENST00000560260 PCYT1BQ9Y5K3 369 aaPredicted RBP21.6■■□□□ 1.05
SNX1-210ENST00000560260 SDR42E2A6NKP2 422 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 SMAPO00193 183 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 SCAMP1O15126 338 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 MTX2O75431 263 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 CEACAM5P06731 702 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 ARNTP27540 789 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 FOXN2P32314 431 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 CDKN1CP49918 316 aaPredicted RBP21.59■■□□□ 1.05
SNX1-210ENST00000560260 IL9RQ01113 521 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 NFATC2Q13469 925 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 LAMB3Q13751 1172 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 PTK2BQ14289 1009 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 SKIDA1Q1XH10 827 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 BBS9Q3SYG4 887 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 AASDHQ4L235 1098 aaPredicted RBP21.59■■□□□ 1.05
SNX1-210ENST00000560260 PNPLA1Q8N8W4 532 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 BBOF1Q8ND07 529 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 OR56A4Q8NGH8 313 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 ZNF398Q8TD17 642 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 PEX13Q92968 403 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 ART4Q93070 314 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 TSACCQ96A04 125 aaPredicted RBP21.59■■□□□ 1.05
SNX1-210ENST00000560260 FCRL3Q96P31 734 aaPredicted RBP21.59■■□□□ 1.05
SNX1-210ENST00000560260 FAM96AQ9H5X1 160 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 ASB8Q9H765 288 aa21.59■■□□□ 1.05
SNX1-210ENST00000560260 SMOXQ9NWM0 555 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms