RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 REV1Q9UBZ9 1251 aa7.41□□□□□ -1.22
SPG11-213ENST00000558988 PCSK1NQ9UHG2 260 aa7.41□□□□□ -1.22
SPG11-213ENST00000558988 FADS3Q9Y5Q0 445 aa7.41□□□□□ -1.22
SPG11-213ENST00000558988 MYLKQ15746 1914 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 URB1O60287 2271 aaKnown RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 APC2O95996 2303 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 ACACAQ13085 2346 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 AKAP13Q12802 2813 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 A0A1W2PQJ5 194 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 CPED1A4D0V7 1026 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 MROH6A6NGR9 719 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 LRRC53A6NM62 1247 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 SIGLEC16A6NMB1 481 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 C10orf142B7Z368 130 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 INSIG1O15503 277 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 TEX33O43247 280 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 DAPK3O43293 454 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 KDELR3O43731 214 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 ZNF205O95201 554 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 PIGNO95427 931 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 POP4O95707 220 aaKnown RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 MBD3O95983 291 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 CAPNS1P04632 268 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 PRKCGP05129 697 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 ALPPL2P10696 532 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 FERP16591 822 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 ABCG1P45844 678 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 ZNF143P52747 638 aaPredicted RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 OGDHQ02218 1023 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 RAD51Q06609 339 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 C1orf61Q13536 156 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 COL9A2Q14055 689 aaPredicted RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 FZD2Q14332 565 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 ASIC2Q16515 512 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 CDKN3Q16667 212 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 DEFB133Q30KQ1 61 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 MYLK3Q32MK0 819 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 PPP6R3Q5H9R7 873 aaPredicted RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 TPRG1LQ5T0D9 272 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 CAVIN1Q6NZI2 390 aaKnown RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 NEK5Q6P3R8 708 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 GDPD4Q6W3E5 623 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 RBM43Q6ZSC3 357 aaKnown RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 ARCQ7LC44 396 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 KANSL1Q7Z3B3 1105 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 RD3Q7Z3Z2 195 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 PHF13Q86YI8 300 aaPredicted RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 RBFAQ8N0V3 343 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 RTL3Q8N8U3 475 aaKnown RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 ZNF548Q8NEK5 533 aaPredicted RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 OR4C6Q8NH72 309 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 LMX1AQ8TE12 382 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 CXorf40AQ8TE69 158 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 FRMD6Q96NE9 622 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 ERGIC2Q96RQ1 377 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 ABCG4Q9H172 646 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 DHX35Q9H5Z1 703 aaKnown RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 CATSPERBQ9H7T0 1116 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 TMEM51Q9NW97 253 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 MYO1AQ9UBC5 1043 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 UBA2Q9UBT2 640 aaPredicted RBP7.4□□□□□ -1.22
SPG11-213ENST00000558988 FZD10Q9ULW2 581 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 NEU3Q9UQ49 428 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 CLCA2Q9UQC9 943 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 COQ6Q9Y2Z9 468 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 PCDHGA1Q9Y5H4 931 aa7.4□□□□□ -1.22
SPG11-213ENST00000558988 COL5A1P20908 1838 aaPredicted RBP7.4□□□□□ -1.23
SPG11-213ENST00000558988 FAM208BQ5VWN6 2430 aa7.4□□□□□ -1.23
SPG11-213ENST00000558988 KNTC1P50748 2209 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 NEMP2A6NFY4 417 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 ZSCAN5CA6NGD5 496 aaPredicted RBP7.39□□□□□ -1.23
SPG11-213ENST00000558988 J3KR12 359 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 AGRPO00253 132 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 DFFAO00273 331 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 EEF2KO00418 725 aaKnown RBP7.39□□□□□ -1.23
SPG11-213ENST00000558988 MUSKO15146 869 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 TSPAN6O43657 245 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 BRINP1O60477 761 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 DNAJA2O60884 412 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 GSRP00390 522 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 MT-CO3P00414 261 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 C1SP09871 688 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 CCDC172P0C7W6 258 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 SKILP12757 684 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 ITPKBP27987 946 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 EIF2S3P41091 472 aaKnown RBP7.39□□□□□ -1.23
SPG11-213ENST00000558988 CCDC173Q0VFZ6 552 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 NCAPHQ15003 741 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 CA9Q16790 459 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 FILIP1LQ4L180 1135 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 FAXCQ5TGI0 409 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 ACAD10Q6JQN1 1059 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 KYAT3Q6YP21 454 aaKnown RBP7.39□□□□□ -1.23
SPG11-213ENST00000558988 CLEC17AQ6ZS10 378 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 ABI3BPQ7Z7G0 1075 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 PARGQ86W56 976 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 MCOLN2Q8IZK6 566 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 MAPK15Q8TD08 544 aa7.39□□□□□ -1.23
SPG11-213ENST00000558988 CENPIQ92674 756 aaPredicted RBP7.39□□□□□ -1.23
SPG11-213ENST00000558988 NTAN1Q96AB6 310 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms