RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 FERMT1Q9BQL6 677 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 HERPUD2Q9BSE4 406 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 GBA3Q9H227 469 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 CARD9Q9H257 536 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 LRRN3Q9H3W5 708 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 ASCL3Q9NQ33 180 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 KLHL8Q9P2G9 620 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 ADGRG1Q9Y653 693 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 OAS3Q9Y6K5 1087 aaKnown RBP15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 RNF215Q9Y6U7 377 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 SCN8AQ9UQD0 1980 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 CCDC187A0A096LP49 1063 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 A0A1W2PNU3 283 aaPredicted RBP15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 ZW10O43264 779 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 PMPCBO75439 489 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 TJP3O95049 919 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 FASLGP48023 281 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 CLCNKAP51800 687 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 SQSTM1Q13501 440 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 LLGL1Q15334 1064 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 TCEA2Q15560 299 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 ZNF569Q5MCW4 686 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 B4GALNT4Q76KP1 1039 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 TRIM74Q86UV6 250 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 CDKL3Q8IVW4 592 aaPredicted RBP15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 KLHDC8BQ8IXV7 354 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 NAGSQ8N159 534 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 GPR26Q8NDV2 337 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 WDR36Q8NI36 951 aaKnown RBP15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 ACTL9Q8TC94 416 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 TMEM159Q96B96 161 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 ATXN7L3BQ96GX2 97 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 OXNAD1Q96HP4 312 aaPredicted RBP15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 MRGPRX2Q96LB1 330 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 TMEM74Q96NL1 305 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 PPP1R2P1Q96PQ5 205 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 VPS35Q96QK1 796 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 HEMGNQ9BXL5 484 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 GPR63Q9BZJ6 419 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 LRIT1Q9P2V4 623 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 TMEM98Q9Y2Y6 226 aa15.91■□□□□ 0.14
CCDC88C-209ENST00000554872 ADAMTS20P59510 1910 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 CDRT15L2A8MXV6 281 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 GOLGA6L6A8MZA4 724 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 NUAK1O60285 661 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 PPFIA2O75334 1257 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 MPOP05164 745 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 RPLP0P05388 317 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 AK4P27144 223 aaPredicted RBP15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 TNNT3P45378 269 aaPredicted RBP15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 NAP1L1P55209 391 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 GSDMDP57764 484 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 CCL7P80098 99 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 B4GALNT1Q00973 533 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 OTUD4Q01804 1114 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 ZFP36L1Q07352 338 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 SLC1A5Q15758 541 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 SIRPB2Q5JXA9 342 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 ITPRIPL1Q6GPH6 555 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 DOK6Q6PKX4 331 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 SLC30A9Q6PML9 568 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 PID1Q7Z2X4 250 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 PEX26Q7Z412 305 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 CLEC14AQ86T13 490 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 TTC30BQ8N4P2 665 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 RNF10Q8N5U6 811 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 UBL4BQ8N7F7 174 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 HAUS1Q96CS2 278 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 PRR11Q96HE9 360 aaPredicted RBP15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 SLC46A1Q96NT5 459 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 C19orf43Q9BQ61 176 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 TRIM39Q9HCM9 518 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 THSD1Q9NS62 852 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 AMFRQ9UKV5 643 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 LHX6Q9UPM6 363 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 SATB2Q9UPW6 733 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 SHOC2Q9UQ13 582 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 SPO11Q9Y5K1 396 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 BPTFQ12830 3046 aa15.9■□□□□ 0.14
CCDC88C-209ENST00000554872 A6NCN8 305 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 H7C0C1 242 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 CHUKO15111 745 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 INPP4BO15327 924 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 RRP8O43159 456 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 VEGFDO43915 354 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 ANXA9O76027 345 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 ECEL1O95672 775 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 ITGA2BP08514 1039 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 PIRTP0C851 137 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 PYGMP11217 842 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 BPIP17213 487 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 RBL1P28749 1068 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 ACTR1BP42025 376 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 ATP5OP48047 213 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 GEMP55040 296 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 INHBCP55103 352 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 PCBP4P57723 403 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 ACTR1AP61163 376 aa15.89■□□□□ 0.13
CCDC88C-209ENST00000554872 KLF1Q13351 362 aaPredicted RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms