RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SNX2O60749 519 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 CBX6O95503 412 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 FGFR1OPO95684 399 aaKnown RBP12.78□□□□□ -0.36
VPS29-211ENST00000553128 RECKO95980 971 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 ATP1A1P05023 1023 aaKnown RBP12.78□□□□□ -0.36
VPS29-211ENST00000553128 CCNYL3P0C7X3 344 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 FGF5P12034 268 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 KRT3P12035 628 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 CTPS1P17812 591 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 NFKBIAP25963 317 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 TPI1P60174 286 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 AP1S1P61966 158 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 FMO1Q01740 532 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 SLC10A7Q0GE19 358 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 TRAF2Q12933 501 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 LRP8Q14114 963 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 CA9Q16790 459 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 UGT8Q16880 541 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 KLHDC7AQ5VTJ3 777 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 SLC9B2Q86UD5 537 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 PLXDC1Q8IUK5 500 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 PGBD5Q8N414 524 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 NPWQ8N729 165 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 MARVELD3Q96A59 401 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 AP2M1Q96CW1 435 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 COX14Q96I36 57 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 C5orf34Q96MH7 638 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 SLC29A3Q9BZD2 475 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 BRD8Q9H0E9 1235 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 SLAMF7Q9NQ25 335 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 KCTD5Q9NXV2 234 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 CPNE7Q9UBL6 633 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 CNOT8Q9UFF9 292 aaKnown RBP12.78□□□□□ -0.36
VPS29-211ENST00000553128 ZNHIT2Q9UHR6 403 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 SLC5A6Q9Y289 635 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 F8P00451 2351 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 CROCCQ5TZA2 2017 aa12.78□□□□□ -0.36
VPS29-211ENST00000553128 NF1P21359 2839 aa12.77□□□□□ -0.36
VPS29-211ENST00000553128 ARHGAP10A1A4S6 786 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 GOLGA6L4A6NEF3 574 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 DFFAO00273 331 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 ACP5P13686 325 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 PTGIRP43119 386 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 MTIF2P46199 727 aaKnown RBP12.77□□□□□ -0.37
VPS29-211ENST00000553128 UBE2IP63279 158 aaKnown RBP12.77□□□□□ -0.37
VPS29-211ENST00000553128 IL11RAQ14626 422 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 MIIPQ5JXC2 388 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 FAM69BQ5VUD6 431 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 ELOA2Q8IYF1 753 aaPredicted RBP12.77□□□□□ -0.37
VPS29-211ENST00000553128 FDCSPQ8NFU4 85 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 SH3KBP1Q96B97 665 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 SNRNP40Q96DI7 357 aaKnown RBP12.77□□□□□ -0.37
VPS29-211ENST00000553128 PSKH2Q96QS6 385 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 PCDHB18PQ96TA0 734 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 NUDT9Q9BW91 350 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 UNKQ9C0B0 810 aaKnown RBP12.77□□□□□ -0.37
VPS29-211ENST00000553128 STN1Q9H668 368 aaKnown RBP12.77□□□□□ -0.37
VPS29-211ENST00000553128 SP110Q9HB58 689 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 NOD2Q9HC29 1040 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 ACSS2Q9NR19 701 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 ASF1BQ9NVP2 202 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 SCHIP1Q9P0W5 487 aaPredicted RBP12.77□□□□□ -0.37
VPS29-211ENST00000553128 KIAA1468Q9P260 1216 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 RWDD2AQ9UIY3 292 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 ATP6V1DQ9Y5K8 247 aa12.77□□□□□ -0.37
VPS29-211ENST00000553128 SETD2Q9BYW2 2564 aaPredicted RBP12.76□□□□□ -0.37
VPS29-211ENST00000553128 LILRA5A6NI73 299 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 C21orf140B9A014 251 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 F8VZ95 297 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 PSMD11O00231 422 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 CEACAM4O75871 244 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 ASMTLO95671 621 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 CYP2A6P11509 494 aaPredicted RBP12.76□□□□□ -0.37
VPS29-211ENST00000553128 F3P13726 295 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 PTPN4P29074 926 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 RPL7AP62424 266 aaKnown RBP12.76□□□□□ -0.37
VPS29-211ENST00000553128 PTSQ03393 145 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 LBRQ14739 615 aaKnown RBP12.76□□□□□ -0.37
VPS29-211ENST00000553128 CHRNA6Q15825 494 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.76□□□□□ -0.37
VPS29-211ENST00000553128 TMCO4Q5TGY1 634 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 LRRC66Q68CR7 880 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 PWWP2BQ6NUJ5 590 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 LZTR1Q8N653 840 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 TTC13Q8NBP0 860 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 THAP4Q8WY91 577 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 SCRN2Q96FV2 425 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 PLEKHG4BQ96PX9 1271 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 MCCC1Q96RQ3 725 aaPredicted RBP12.76□□□□□ -0.37
VPS29-211ENST00000553128 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.76□□□□□ -0.37
VPS29-211ENST00000553128 CNOT6Q9ULM6 557 aaKnown RBP12.76□□□□□ -0.37
VPS29-211ENST00000553128 PHTF1Q9UMS5 762 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 ZNF451Q9Y4E5 1061 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 ITPR3Q14573 2671 aa12.76□□□□□ -0.37
VPS29-211ENST00000553128 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.75□□□□□ -0.37
VPS29-211ENST00000553128 A6NL46 340 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 DPM1O60762 260 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 SOCS5O75159 536 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 LRCH4O75427 683 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 RASSF9O75901 435 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms