RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 LYPLA1O75608 230 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 RFPL1O75677 317 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 ATE1O95260 518 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 NFATC1O95644 943 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 NCAM1P13591 858 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF26P17031 533 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 JAK1P23458 1154 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 EPHA3P29320 983 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 RPL22P35268 128 aaKnown RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 OPRD1P41143 372 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 SLC6A11P48066 632 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 GSSP48637 474 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 SLC1A6P48664 564 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 GDF10P55107 478 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 CDH15P55291 814 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 PITX1P78337 314 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 BASP1P80723 227 aaKnown RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 CAMK2BQ13554 666 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 NRF1Q16656 503 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 CDO1Q16878 200 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 C15orf59Q2T9L4 293 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 TRIM16LQ309B1 348 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 FASTKD1Q53R41 847 aaKnown RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 FSTL4Q6MZW2 842 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 PKN3Q6P5Z2 889 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 BNC2Q6ZN30 1099 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 Q6ZNB5 142 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 TPGS1Q6ZTW0 290 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 MAML2Q8IZL2 1156 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 NDUFAF2Q8N183 169 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 PHTF2Q8N3S3 785 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 CPA6Q8N4T0 437 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 NAT16Q8N8M0 369 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 NIPA2Q8N8Q9 360 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 TERB1Q8NA31 727 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 BHLHE22Q8NFJ8 381 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF420Q8TAQ5 688 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 BHMTQ93088 406 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 FAM149B1Q96BN6 582 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 TAMM41Q96BW9 452 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 CFAP36Q96G28 342 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF597Q96LX8 424 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 NELL2Q99435 816 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 CNPY3Q9BT09 278 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 OLAHQ9NV23 265 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 POLR3BQ9NW08 1133 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 PACSIN3Q9UKS6 424 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 ERGIC3Q9Y282 383 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 B3GNT3Q9Y2A9 372 aa7.65□□□□□ -1.18
LIMA1-216ENST00000552909 EP300Q09472 2414 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-216ENST00000552909 H3BMQ9 156 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 KPNA4O00629 521 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TRDMT1O14717 391 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 GALR2O43603 387 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 LRCH4O75427 683 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 EGFP01133 1207 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 XRCC1P18887 633 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 CORO1AP31146 461 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 SDC4P31431 198 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 NUDT2P50583 147 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 BMXP51813 675 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 THOP1P52888 689 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 YWHAZP63104 245 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 CD300CQ08708 224 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 MTAPQ13126 283 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 BMPR2Q13873 1038 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 CYP2A13Q16696 494 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 PHKG1Q16816 387 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 HADHQ16836 314 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 SMUG1Q53HV7 270 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 RAB6CQ53S08 254 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TMEM196Q5HYL7 178 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 KCNT1Q5JUK3 1230 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TEDDM1Q5T9Z0 273 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 LRRC38Q5VT99 294 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 MBLAC2Q68D91 279 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TXNRD3NBQ6F5E7 133 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 C16orf46Q6P387 395 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 SCYL2Q6P3W7 929 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 SLC26A9Q7LBE3 791 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 MAVSQ7Z434 540 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 SETD3Q86TU7 594 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 DENND1CQ8IV53 801 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TMEM102Q8N9M5 508 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 PCYOX1LQ8NBM8 494 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 RNF139Q8WU17 664 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 PDCD6IPQ8WUM4 868 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TRUB1Q8WWH5 349 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 COG8Q96MW5 612 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 PHOX2BQ99453 314 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 P2RY13Q9BPV8 354 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 RAB6CQ9H0N0 254 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 RPF2Q9H7B2 306 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 SPHK2Q9NRA0 654 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 TBC1D14Q9P2M4 693 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 AGO1Q9UL18 857 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 CDC14AQ9UNH5 594 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 MRPS17Q9Y2R5 130 aaKnown RBP7.64□□□□□ -1.19
LIMA1-216ENST00000552909 NOX1Q9Y5S8 564 aa7.64□□□□□ -1.19
LIMA1-216ENST00000552909 ZNF292O60281 2723 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms