RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 EBF1Q9UH73 591 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 TSR3Q9UJK0 312 aaKnown RBP7.46□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF225Q9UK10 706 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 PADI4Q9UM07 663 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 SLC27A5Q9Y2P5 690 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 NUP214P35658 2090 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 GRXCR2A6NFK2 248 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 GLTPD2A6NH11 291 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 FAM155AB1AL88 458 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 H0YJX3 145 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 INPP4BO15327 924 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 MAGEB3O15480 346 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 GPR39O43194 453 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 RAMP2O60895 175 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 ECI2O75521 394 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 CELF2O95319 508 aaKnown RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 FGF4P08620 206 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 HSPA8P11142 646 aaKnown RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 AKR1A1P14550 325 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 STT3AP46977 705 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 ZFP36L2P47974 494 aaKnown RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 ATP4BP51164 291 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 GALK1P51570 392 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 STC1P52823 247 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 EMP3P54852 163 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 ATP6V0D1P61421 351 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 UFM1P61960 85 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 TRIM32Q13049 653 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 SERINC3Q13530 473 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 DSC3Q14574 896 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 RPS6KA2Q15349 733 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 TAF1CQ15572 869 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 TMEM259Q4ZIN3 620 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 HABP4Q5JVS0 413 aaKnown RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 NADSYN1Q6IA69 706 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 CHST15Q7LFX5 561 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 GALNT7Q86SF2 657 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 LRRC49Q8IUZ0 686 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 DRAXINQ8NBI3 349 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 OR2T11Q8NH01 316 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 RIN3Q8TB24 985 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 DTNBP1Q96EV8 351 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 CDKN2AIPNLQ96HQ2 116 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 CDK15Q96Q40 435 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 AARSD1Q9BTE6 412 aaKnown RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 ADI1Q9BV57 179 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 CRISPLD1Q9H336 500 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 AGPAT4Q9NRZ5 378 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 CATSPERZQ9NTU4 200 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 INTS7Q9NVH2 962 aaKnown RBP7.46□□□□□ -1.22
LIMA1-213ENST00000552720 RNF112Q9ULX5 631 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 CDC14AQ9UNH5 594 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 SCML2Q9UQR0 700 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 PCDHA9Q9Y5H5 950 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 GPR45Q9Y5Y3 372 aa7.46□□□□□ -1.22
LIMA1-213ENST00000552720 IGLV3-10A0A075B6K4 115 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 RNF103-CHMP3A0A140T963 221 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 SLC12A8A0AV02 714 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 NPEPPSL1A6NEC2 478 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 EI24O14681 340 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 ACOX3O15254 700 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 OR1I1O60431 355 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 RPP40O75818 363 aaKnown RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 RHOBTB1O94844 696 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 STAMBPO95630 424 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 LBPP18428 481 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 SLC26A3P40879 764 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 YAP1P46937 504 aaKnown RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 GSK3BP49841 420 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 KCNQ1P51787 676 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 ACVR1Q04771 509 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 CYP51A1Q16850 503 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 MRNIPQ6NTE8 343 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 BLOC1S3Q6QNY0 202 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 SYVN1Q86TM6 617 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 CLVS1Q8IUQ0 354 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 KIAA2013Q8IYS2 634 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 FBXO39Q8N4B4 442 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 MINDY1Q8N5J2 469 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 OR7D4Q8NG98 312 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 GABPB2Q8TAK5 448 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 CYGBQ8WWM9 190 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 TMEM125Q96AQ2 219 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 SEPHS2Q99611 448 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 GPR21Q99679 349 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 SYT17Q9BSW7 474 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 HAUS8Q9BT25 410 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 DCUN1D5Q9BTE7 237 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 POLR1EQ9GZS1 481 aaKnown RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 CCSER2Q9H7U1 834 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 CLK4Q9HAZ1 481 aaKnown RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 SDR39U1Q9NRG7 319 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 TRMT13Q9NUP7 481 aaKnown RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 GALNT8Q9NY28 637 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 EVLQ9UI08 416 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 Q9Y3F1 56 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 OAS3Q9Y6K5 1087 aaKnown RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 CASP8AP2Q9UKL3 1982 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 BBIP1A8MTZ0 92 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 DUSP11O75319 330 aaKnown RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms