RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	TUBB6	Q9BUF5	446 aa		4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	OPA3	Q9H6K4	179 aa		4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	PNRC2	Q9NPJ4	139 aa	Known RBP	4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	ARHGEF38	Q9NXL2	777 aa		4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	SEL1L	Q9UBV2	794 aa		4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	ANAPC2	Q9UJX6	822 aa		4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	PLAGL1	Q9UM63	463 aa		4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	R3HDM2	Q9Y2K5	976 aa	Known RBP	4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	RAP2C	Q9Y3L5	183 aa		4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	TNS3	Q68CZ2	1445 aa		4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	RRBP1	Q9P2E9	1410 aa	Known RBP	4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	NRXN3	Q9Y4C0	1643 aa		4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	RGPD8	O14715	1765 aa	Predicted RBP	4.17	□□□□□ -1.74
SNHG1-222	ENST00000545308	RREB1	Q92766	1687 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	CDC42BPG	Q6DT37	1551 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	PRAG1	Q86YV5	1406 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	LOC102723996	A0A087X1L8	192 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308		A0A1B0GVM2	712 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	C1orf226	A1L170	272 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	KIF1C	O43896	1103 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	CLDN7	O95471	211 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	GGPS1	O95749	300 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	SCG2	P13521	617 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	MMP9	P14780	707 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	MUT	P22033	750 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	ACADL	P28330	430 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	TNFSF8	P32971	234 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	RFC1	P35251	1148 aa	Predicted RBP	4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	THPO	P40225	353 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	TMPRSS3	P57727	454 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	TUBA4A	P68366	448 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	HSF1	Q00613	529 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	SORD	Q00796	357 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	CFHR1	Q03591	330 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	DDR1	Q08345	913 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	SLC15A2	Q16348	729 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	KRT24	Q2M2I5	525 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	TMEM119	Q4V9L6	283 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	IGSF11	Q5DX21	431 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	TTC39A	Q5SRH9	613 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	C6orf141	Q5SZD1	244 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	RNF168	Q8IYW5	571 aa	Predicted RBP	4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	MMP21	Q8N119	569 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	PARP16	Q8N5Y8	322 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	DPP10	Q8N608	796 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	HORMAD2	Q8N7B1	307 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	KDM1B	Q8NB78	822 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	GOT1L1	Q8NHS2	421 aa	Predicted RBP	4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	ZNF622	Q969S3	477 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	SPATA17	Q96L03	361 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	SLITRK1	Q96PX8	696 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	FAM110A	Q9BQ89	295 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	TMEM47	Q9BQJ4	181 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	DESI2	Q9BSY9	194 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	KIFC3	Q9BVG8	833 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	MRPL1	Q9BYD6	325 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	LHPP	Q9H008	270 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	CDT1	Q9H211	546 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	MAU2	Q9Y6X3	613 aa		4.16	□□□□□ -1.74
SNHG1-222	ENST00000545308	EIF3A	Q14152	1382 aa	Known RBP	4.15	□□□□□ -1.74
SNHG1-222	ENST00000545308	ABCC11	Q96J66	1382 aa		4.15	□□□□□ -1.74
SNHG1-222	ENST00000545308	ANKRD30B	Q9BXX2	1392 aa		4.15	□□□□□ -1.74
SNHG1-222	ENST00000545308	NUP188	Q5SRE5	1749 aa		4.15	□□□□□ -1.74
SNHG1-222	ENST00000545308	RGPD3	A6NKT7	1758 aa	Predicted RBP	4.15	□□□□□ -1.74
SNHG1-222	ENST00000545308	RGPD4	Q7Z3J3	1758 aa		4.15	□□□□□ -1.74
SNHG1-222	ENST00000545308	NAIP	Q13075	1403 aa		4.15	□□□□□ -1.74
SNHG1-222	ENST00000545308	VPS8	Q8N3P4	1428 aa		4.15	□□□□□ -1.74
SNHG1-222	ENST00000545308	TRBV5-3	A0A0A0MS03	114 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	KIR2DS5	A0A0G2JLQ3	304 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	WIPF3	A6NGB9	483 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	KIR2DS3	K7RE56	304 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	PLRG1	O43660	514 aa	Known RBP	4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	TBCA	O75347	108 aa	Known RBP	4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	AVIL	O75366	819 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	ABCB1	P08183	1280 aa	Predicted RBP	4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	MMP2	P08253	660 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	MYBL1	P10243	752 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	ANXA7	P20073	488 aa	Known RBP	4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	DCTD	P32321	178 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	CTNNA1	P35221	906 aa	Known RBP	4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	PRELP	P51888	382 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	TAS2R40	P59535	323 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	TFCP2	Q12800	502 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	NAE1	Q13564	534 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	SNTB1	Q13884	538 aa	Known RBP	4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	IL11RA	Q14626	422 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	LPIN1	Q14693	890 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	DLG2	Q15700	870 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	C15orf59	Q2T9L4	293 aa	Predicted RBP	4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	KRBOX4	Q5JUW0	171 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	KRT79	Q5XKE5	535 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	SUMO4	Q6EEV6	95 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	ISM2	Q6H9L7	571 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	TMEM71	Q6P5X7	295 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	DCLRE1A	Q6PJP8	1040 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	FAM57B	Q71RH2	274 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	PTF1A	Q7RTS3	328 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	TSPAN33	Q86UF1	283 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	DENND6A	Q8IWF6	608 aa		4.15	□□□□□ -1.75
SNHG1-222	ENST00000545308	WDR63	Q8IWG1	891 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms