RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 CCDC3Q9BQI4 270 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 SPATA16Q9BXB7 569 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 FRMD8P1Q9BZ68 369 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-216ENST00000544989 FEZ2Q9UHY8 353 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-216ENST00000544989 GPSM3Q9Y4H4 160 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 ADGRG1Q9Y653 693 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 AK5Q9Y6K8 562 aa11.73□□□□□ -0.53
HDAC4-216ENST00000544989 ASXL3Q9C0F0 2248 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 B4DGG1 531 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 CSO75390 466 aaKnown RBP11.72□□□□□ -0.53
HDAC4-216ENST00000544989 ASMTLO95671 621 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 CCDC175P0C221 793 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 MYF5P13349 255 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 ACTN2P35609 894 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 MLLT3P42568 568 aaPredicted RBP11.72□□□□□ -0.53
HDAC4-216ENST00000544989 PDE1BQ01064 536 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 CYP4F3Q08477 520 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 BIRC2Q13490 618 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 HLTFQ14527 1009 aaKnown RBP eCLIP11.72□□□□□ -0.53
HDAC4-216ENST00000544989 ISXQ2M1V0 245 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 PYCR3Q53H96 274 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 SEL1L2Q5TEA6 688 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 DOK6Q6PKX4 331 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 ZNF662Q6ZS27 426 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 RFLNAQ6ZTI6 216 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 B4GALNT4Q76KP1 1039 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 PHYKPLQ8IUZ5 450 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 MDM1Q8TC05 714 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 ZDHHC1Q8WTX9 485 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 CCDC74AQ96AQ1 378 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 MRGPRX2Q96LB1 330 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 SPATA13Q96N96 652 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 SMIM14Q96QK8 99 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 GFM1Q96RP9 751 aaKnown RBP11.72□□□□□ -0.53
HDAC4-216ENST00000544989 CARD9Q9H257 536 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 UBP1Q9NZI7 540 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 TAAR2Q9P1P5 351 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 SHOC2Q9UQ13 582 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 PKP3Q9Y446 797 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 APC2O95996 2303 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 ADAMTS20P59510 1910 aa11.72□□□□□ -0.53
HDAC4-216ENST00000544989 A0A0U1RQS6 177 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 RHPN2P1A8MT19 583 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 NTN3O00634 580 aaPredicted RBP11.71□□□□□ -0.53
HDAC4-216ENST00000544989 INPP4BO15327 924 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 KCNN4O15554 427 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 NOBOXO60393 691 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 SLC25A14O95258 325 aaPredicted RBP11.71□□□□□ -0.53
HDAC4-216ENST00000544989 FTCDO95954 541 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 ACTR1BP42025 376 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 GPR3P46089 330 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 LSSP48449 732 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 ACTR1AP61163 376 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 CTBSQ01459 385 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 EIF3IQ13347 325 aaKnown RBP11.71□□□□□ -0.53
HDAC4-216ENST00000544989 P3H1Q32P28 736 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 SIRPB2Q5JXA9 342 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 ANKRD20A2Q5SQ80 823 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 PERM1Q5SV97 790 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 ANKRD20A1Q5TYW2 823 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 ANKRD20A3Q5VUR7 823 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 KCTD16Q68DU8 428 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 IGF2-ASQ6U949 168 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 GLT6D1Q7Z4J2 308 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 CCNJLQ8IV13 435 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 IPMKQ8NFU5 416 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 BRSK1Q8TDC3 778 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 GLYATL1Q969I3 302 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 TMEM74Q96NL1 305 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 VPS35Q96QK1 796 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 WDR24Q96S15 920 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 AGAP2Q99490 1192 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 C19orf43Q9BQ61 176 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 ZCCHC2Q9C0B9 1178 aaKnown RBP11.71□□□□□ -0.53
HDAC4-216ENST00000544989 STRADBQ9C0K7 418 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 STN1Q9H668 368 aaKnown RBP11.71□□□□□ -0.53
HDAC4-216ENST00000544989 CAAP1Q9H8G2 361 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 POLR1BQ9H9Y6 1135 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 TRIM39Q9HCM9 518 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 LRIT1Q9P2V4 623 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 TRIM10Q9UDY6 481 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 ZNHIT2Q9UHR6 403 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 CNOT6Q9ULM6 557 aaKnown RBP11.71□□□□□ -0.53
HDAC4-216ENST00000544989 GUCA1BQ9UMX6 200 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 TMEM98Q9Y2Y6 226 aa11.71□□□□□ -0.53
HDAC4-216ENST00000544989 TENM4Q6N022 2769 aa11.71□□□□□ -0.54
HDAC4-216ENST00000544989 RP1P56715 2156 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 C5orf60A6NFR6 353 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 OR5K4A6NMS3 321 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 C2orf81A6NN90 581 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 DDX3YO15523 660 aaKnown RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 PSMD3O43242 534 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 VEGFDO43915 354 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 NUAK1O60285 661 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 DNAJC6O75061 913 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 USP12O75317 370 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 DXOO77932 396 aaKnown RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 SLC4A1P02730 911 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 FUCA1P04066 466 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 PIRTP0C851 137 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms