RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	HIC2	Q96JB3	615 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	LOXL4	Q96JB6	756 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	BMF	Q96LC9	184 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	TTC25	Q96NG3	672 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	C19orf43	Q9BQ61	176 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	ORAI3	Q9BRQ5	295 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	PARD6B	Q9BYG5	372 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	ARRDC1-AS1	Q9H2J1	176 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	ARFGAP3	Q9NP61	516 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	CATSPERZ	Q9NTU4	200 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	TMEM74B	Q9NUR3	256 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	GMEB2	Q9UKD1	530 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	PILRB	Q9UKJ0	227 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	SLCO1B1	Q9Y6L6	691 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	FAM169A	Q9Y6X4	670 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	FADS2P1	A8MWK0	482 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	C10orf142	B7Z368	130 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545		H7C0S8	307 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	TLR4	O00206	839 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	TOR1B	O14657	336 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	PFDN6	O15212	129 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	CD3EAP	O15446	510 aa	Known RBP	10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	GPR39	O43194	453 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	NDUFS3	O75489	264 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	TUBB	P07437	444 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	ERVK-10	P10266	1014 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	MSH3	P20585	1137 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	KEL	P23276	732 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	TEAD1	P28347	426 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	ECHS1	P30084	290 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	SSTR1	P30872	391 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	AKT1	P31749	480 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	PPARG	P37231	505 aa	Predicted RBP	10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	CDKN1C	P49918	316 aa	Predicted RBP	10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	PFN3	P60673	137 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	YPEL5	P62699	121 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	VSNL1	P62760	191 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	CDK3	Q00526	305 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	ACVR1	Q04771	509 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	NFATC2	Q13469	925 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	GTF2H3	Q13889	308 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	PDE1C	Q14123	709 aa	Predicted RBP	10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	CRYM	Q14894	314 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	NUMA1	Q14980	2115 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	CCDC6	Q16204	474 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	KYNU	Q16719	465 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	DUOXA1	Q1HG43	343 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	GPR33	Q49SQ1	333 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	LDLRAP1	Q5SW96	308 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	PDPK2P	Q6A1A2	396 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	LAIR1	Q6GTX8	287 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	MRNIP	Q6NTE8	343 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	NEPRO	Q6NW34	567 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	ENPP7	Q6UWV6	458 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	LAYN	Q6UX15	382 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	C3orf62	Q6ZUJ4	267 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	MICALCL	Q6ZW33	695 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	RD3	Q7Z3Z2	195 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	RABEPK	Q7Z6M1	372 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	ABI3BP	Q7Z7G0	1075 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	KCNMB4	Q86W47	210 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	SERPINA9	Q86WD7	417 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	PHYKPL	Q8IUZ5	450 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	EIF1AD	Q8N9N8	165 aa	Known RBP	10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	GABPB2	Q8TAK5	448 aa	Predicted RBP	10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	CEP76	Q8TAP6	659 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	GSDMB	Q8TAX9	411 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	DTX3L	Q8TDB6	740 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	BTN2A2	Q8WVV5	523 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	GLYATL1	Q969I3	302 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	FUBP1	Q96AE4	644 aa	Known RBP	10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	WDR83	Q9BRX9	315 aa	Known RBP	10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	PHACTR1	Q9C0D0	580 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	IARS2	Q9NSE4	1012 aa	Known RBP	10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	IL1RAPL1	Q9NZN1	696 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	TMEM98	Q9Y2Y6	226 aa		10.08	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZCWPW2	A0A1B0GU75	182 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545		A0A1B0GVT2	93 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545		A0A1W2PR77	199 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	CFAP99	D6REC4	459 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	GAPDHS	O14556	408 aa	Predicted RBP	10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	VILL	O15195	856 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	MTX2	O75431	263 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	EPN2	O95208	641 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	ACSL3	O95573	720 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	SOD1	P00441	154 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	LMNA	P02545	664 aa	Known RBP	10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	WNT1	P04628	370 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	RET	P07949	1114 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	FAM153B	P0C7A2	387 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	PRSS56	P0CW18	603 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	RALB	P11234	206 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	MYCLP1	P12525	358 aa	Predicted RBP	10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	PSMA3	P25788	255 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	TNFRSF8	P28908	595 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	PHB	P35232	272 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	TRIM23	P36406	574 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	MPL	P40238	635 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	ARCN1	P48444	511 aa	Known RBP	10.07	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms