RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 NUP62CLQ9H1M0 184 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 ZWILCHQ9H900 591 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 LRRC4CQ9HCJ2 640 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 FANCLQ9NW38 375 aa17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 CNOT6Q9ULM6 557 aaKnown RBP17.65■□□□□ 0.42
CLSTN3-214ENST00000542663 MED13Q9UHV7 2174 aa17.64■□□□□ 0.42
CLSTN3-214ENST00000542663 A0A0J9YYE9 177 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 RNF8O76064 485 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 ASMTLO95671 621 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 TRBC1P01850 177 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 TPM2P07951 284 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 KRT7P08729 469 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 ANKRD34CP0C6C1 535 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 TCF4P15884 667 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 ZNF30P17039 623 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 IL1R2P27930 398 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 MMP13P45452 471 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 MAPK9P45984 424 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 UQCRFS1P47985 274 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 STC1P52823 247 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 DPYSL2Q16555 572 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 ATCAYQ86WG3 371 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 EXD1Q8NHP7 514 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 ERGIC2Q96RQ1 377 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 WDR24Q96S15 920 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 VPS18Q9P253 973 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 KCNK6Q9Y257 313 aa17.64■□□□□ 0.41
CLSTN3-214ENST00000542663 LGALS16A8MUM7 142 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 PYGLP06737 847 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 F3P13726 295 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 FERP16591 822 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 DLSTP36957 453 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 GFERP55789 205 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 MARC1Q5VT66 337 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 TMCO3Q6UWJ1 677 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 POLNQ7Z5Q5 900 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 TMEM135Q86UB9 458 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 CCDC13Q8IYE1 715 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 BBS5Q8N3I7 341 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 ATPAF2Q8N5M1 289 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 SH3KBP1Q96B97 665 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 ULBP3Q9BZM4 244 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 NT5MQ9NPB1 228 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 OGFRQ9NZT2 677 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 LIMA1Q9UHB6 759 aaKnown RBP17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 CROTQ9UKG9 612 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 CACNA1DQ01668 2161 aa17.63■□□□□ 0.41
CLSTN3-214ENST00000542663 FADS2P1A8MWK0 482 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 MKRN2OSH3BPM6 223 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 H3BRJ5 948 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 C9P02748 559 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 PDGFAP04085 211 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 ATP1A3P13637 1013 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 ACP5P13686 325 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 CDH6P55285 790 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 UBXN1Q04323 297 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 ERV3-1Q14264 604 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 SMTNL2Q2TAL5 461 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 ASB18Q6ZVZ8 466 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 SLC9B2Q86UD5 537 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 TEX26Q8N6G2 289 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 TEX19Q8NA77 164 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 GALNT6Q8NCL4 622 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 CSPG4P5Q96PW8 444 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 HERPUD2Q9BSE4 406 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 STN1Q9H668 368 aaKnown RBP17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 CPNE7Q9UBL6 633 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 CNOT8Q9UFF9 292 aaKnown RBP17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 TLK1Q9UKI8 766 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 PCDHB3Q9Y5E6 796 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 ESPL1Q14674 2120 aa17.62■□□□□ 0.41
CLSTN3-214ENST00000542663 MYO9AB2RTY4 2548 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 LILRA5A6NI73 299 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 SNX2O60749 519 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 CLDN7O95471 211 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 PRLP01236 227 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 ARL4AP40617 200 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 UBE2IP63279 158 aaKnown RBP17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 FOXM1Q08050 763 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 C6orf15Q6UXA7 325 aaPredicted RBP17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 APTXQ7Z2E3 356 aaKnown RBP17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 LYSMD3Q7Z3D4 306 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 PLXDC1Q8IUK5 500 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 C9orf72Q96LT7 481 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 EPB41L1Q9H4G0 881 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 PRDM8Q9NQV8 689 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 PLEKHB1Q9UF11 243 aaPredicted RBP17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 POLHQ9Y253 713 aa17.61■□□□□ 0.41
CLSTN3-214ENST00000542663 ITPR2Q14571 2701 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 KIR2DS5A0A0G2JLQ3 304 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 A0A0G2JNG1 304 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 KIR2DS3K7RE56 304 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 RFPL1O75677 317 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 SH3BP2P78314 561 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 KIR2DS5Q14953 304 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 HENMT1Q5T8I9 393 aaKnown RBP17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 TXNRD3NBQ6F5E7 133 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 ALG1LQ6GMV1 187 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 CAPRIN2Q6IMN6 1127 aaKnown RBP17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms