RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 LRRC26Q2I0M4 334 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 LRFN4Q6PJG9 635 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 XKRXQ6PP77 449 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 PRSS48Q7RTY5 328 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 C16orf62Q7Z3J2 963 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SLC26A11Q86WA9 606 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 METTL23Q86XA0 190 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 ZNF680Q8NEM1 530 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SMG7Q92540 1137 aaKnown RBP9.43□□□□□ -0.9
CLIP1-214ENST00000540539 ELMO1Q92556 727 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 PDXPQ96GD0 296 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SCYL1Q96KG9 808 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 NIFKQ9BYG3 293 aaKnown RBP9.43□□□□□ -0.9
CLIP1-214ENST00000540539 INTS2Q9H0H0 1204 aaKnown RBP9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SH3GLB2Q9NR46 395 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 TOPORSQ9NS56 1045 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-214ENST00000540539 COA4Q9NYJ1 87 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 COL20A1Q9P218 1284 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 OPTCQ9UBM4 332 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 FAM198AQ9UFP1 575 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 ANAPC7Q9UJX3 599 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 COPG1Q9Y678 874 aaKnown RBP9.43□□□□□ -0.9
CLIP1-214ENST00000540539 DDX60LQ5H9U9 1706 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 POLR2AP24928 1970 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 LACTBL1A8MY62 500 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 SLITRK3O94933 977 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 IFNB1P01574 187 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 EPOP01588 193 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 ALBP02768 609 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 NR3C2P08235 984 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 CRHR1P34998 444 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 DGKQP52824 942 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 BPIFB3P59826 476 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 ADARB1P78563 741 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 SP2Q02086 613 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 RGS1Q08116 209 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 TCP10Q12799 353 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 GRIK2Q13002 908 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 SEMA3BQ13214 749 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 SBK1Q52WX2 424 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 RTP2Q5QGT7 225 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 LAMTOR1Q6IAA8 161 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 EPGNQ6UW88 154 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 LIMS2Q7Z4I7 341 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 COMMD7Q86VX2 200 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 RAB43Q86YS6 212 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 PARP16Q8N5Y8 322 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 OR8K5Q8NH50 307 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 ATOH1Q92858 354 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 MUS81Q96NY9 551 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 NPAS2Q99743 824 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 CINPQ9BW66 212 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 SLC6A15Q9H2J7 730 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 RC3H2Q9HBD1 1191 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 CYP4F12Q9HCS2 524 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 ENTPD7Q9NQZ7 604 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 SPATA2Q9UM82 520 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 BTBD3Q9Y2F9 522 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 PCDHGA9Q9Y5G4 932 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 TCP10L2B9ZVM9 353 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 MED24O75448 989 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 CHRNA1P02708 482 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 NR3C1P04150 777 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 SERPINE1P05121 402 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 P4HBP07237 508 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 BMP3P12645 472 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 IL7RP16871 459 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 PROZP22891 400 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 PSMA4P25789 261 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 GBX2P52951 348 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 RPP38P78345 283 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 FLI1Q01543 452 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 EVX2Q03828 476 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 TAF1CQ15572 869 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 CBWD6Q4V339 395 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 CBWD3Q5JTY5 395 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 CBWD5Q5RIA9 395 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 RBM20Q5T481 1227 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 SPRED1Q7Z699 444 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 NECAB2Q7Z6G3 386 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 PPM1NQ8N819 430 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 ZNF557Q8N988 423 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 SMG8Q8ND04 991 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 FBXO22Q8NEZ5 403 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 FAR1Q8WVX9 515 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 CPT1BQ92523 772 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 ZNF300Q96RE9 604 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 GAD1Q99259 594 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 CNPY3Q9BT09 278 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 ACAD9Q9H845 621 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 CYP3A43Q9HB55 503 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 LRRC4Q9HBW1 653 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 ANKHQ9HCJ1 492 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 AGPAT4Q9NRZ5 378 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 ADARB2Q9NS39 739 aaKnown RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 PAK1IP1Q9NWT1 392 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-214ENST00000540539 DPP3Q9NY33 737 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 MBD2Q9UBB5 411 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 OSGIN1Q9UJX0 560 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 HSPB11Q9Y547 144 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms