RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 PCBD2Q9H0N5 130 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 FAM124BQ9H5Z6 455 aaPredicted RBP9.43□□□□□ -0.9
PTPRB-204ENST00000538708 SLC2A4RGQ9NR83 387 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 GRIN2DO15399 1336 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 LEFTY2O00292 366 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 WNT9AO14904 365 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 MGRN1O60291 552 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 PKMP14618 531 aaKnown RBP9.43□□□□□ -0.9
PTPRB-204ENST00000538708 CDH5P33151 784 aaPredicted RBP9.43□□□□□ -0.9
PTPRB-204ENST00000538708 ASPAP45381 313 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 RCN1Q15293 331 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 OTUD3Q5T2D3 398 aaPredicted RBP9.43□□□□□ -0.9
PTPRB-204ENST00000538708 MED27Q6P2C8 311 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 RNF19BQ6ZMZ0 732 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 AMZ2Q86W34 360 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 PYROXD2Q8N2H3 581 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 FAM46DQ8NEK8 389 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 SMPDL3BQ92485 455 aa9.43□□□□□ -0.9
PTPRB-204ENST00000538708 EMID1Q96A84 441 aaPredicted RBP9.43□□□□□ -0.9
PTPRB-204ENST00000538708 TBX18O95935 607 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 CCKBRP32239 447 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 MAPK10P53779 464 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 MAPKAPK3Q16644 382 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 BBS12Q6ZW61 710 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 NEK7Q8TDX7 302 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 KREMEN1Q96MU8 473 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 FZD8Q9H461 694 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 CNTN3Q9P232 1028 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 WWP2O00308 870 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 MAN2B1O00754 1011 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 SNAI1O95863 264 aaPredicted RBP9.42□□□□□ -0.9
PTPRB-204ENST00000538708 ITGA2P17301 1181 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 KLC1Q07866 573 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 DYNC1I2Q13409 638 aaKnown RBP9.42□□□□□ -0.9
PTPRB-204ENST00000538708 NEK5Q6P3R8 708 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 ZBTB49Q6ZSB9 765 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 SLC9B2Q86UD5 537 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 LIX1Q8N485 282 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 EXOSC8Q96B26 276 aaKnown RBP9.42□□□□□ -0.9
PTPRB-204ENST00000538708 RBM18Q96H35 190 aaKnown RBP9.42□□□□□ -0.9
PTPRB-204ENST00000538708 TAPBPLQ9BX59 468 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 HDHD2Q9H0R4 259 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 CAB39LQ9H9S4 337 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 FBXO5Q9UKT4 447 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 PCDHGC3Q9UN70 934 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 TRBC1P01850 177 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 ITGA2BP08514 1039 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 TYRP14679 529 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 H2AFXP16104 143 aaPredicted RBP9.42□□□□□ -0.9
PTPRB-204ENST00000538708 CCNFP41002 786 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 DUSP3P51452 185 aaPredicted RBP9.42□□□□□ -0.9
PTPRB-204ENST00000538708 SEMA5AQ13591 1074 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 CPTPQ5TA50 214 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 AP1ARQ63HQ0 302 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 CYP2R1Q6VVX0 501 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 ABHD13Q7L211 337 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 TMC3Q7Z5M5 1100 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 RDH11Q8TC12 318 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 PXYLP1Q8TE99 480 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 HDAC7Q8WUI4 952 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 DNAJC9Q8WXX5 260 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 PRG2P13727 222 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 PDX1P52945 283 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 SPIBQ01892 262 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 TAF1AQ15573 450 aaPredicted RBP9.42□□□□□ -0.9
PTPRB-204ENST00000538708 C11orf88Q6PI97 169 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 CADM2Q8N3J6 435 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 ZNF366Q8N895 744 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 SLC38A2Q96QD8 506 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 NECTIN3Q9NQS3 549 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 SNX15Q9NRS6 342 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 MTRRQ9UBK8 725 aa9.42□□□□□ -0.9
PTPRB-204ENST00000538708 GOT2P00505 430 aaKnown RBP9.41□□□□□ -0.9
PTPRB-204ENST00000538708 NQO1P15559 274 aaKnown RBP9.41□□□□□ -0.9
PTPRB-204ENST00000538708 CCND1P24385 295 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 L1CAMP32004 1257 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 SMIM11AP58511 58 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 GPR180Q86V85 440 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 SIDT2Q8NBJ9 832 aaKnown RBP9.41□□□□□ -0.9
PTPRB-204ENST00000538708 AZIN2Q96A70 460 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 QKIQ96PU8 341 aaKnown RBP eCLIP9.41□□□□□ -0.9
PTPRB-204ENST00000538708 NDC1Q9BTX1 674 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 ATG10Q9H0Y0 220 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 LDAHQ9H6V9 325 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 DDX18Q9NVP1 670 aaKnown RBP9.41□□□□□ -0.9
PTPRB-204ENST00000538708 DMTF1Q9Y222 760 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 LRIG2O94898 1065 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 LDLRP01130 860 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 KLK3P07288 261 aaPredicted RBP9.41□□□□□ -0.9
PTPRB-204ENST00000538708 IQCF3P0C7M6 154 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 BMP7P18075 431 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 NDUFS1P28331 727 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 UGT2B15P54855 530 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 CASP9P55211 416 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 TPRG1Q6ZUI0 275 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 GPR141Q7Z602 305 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 PIGKQ92643 395 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 CAVIN3Q969G5 261 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 FGFBP2Q9BYJ0 223 aa9.41□□□□□ -0.9
PTPRB-204ENST00000538708 NSUN3Q9H649 340 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms