RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 C17orf82Q86X59 251 aaPredicted RBP14.68□□□□□ -0.06
USP28-204ENST00000537642 CDKL3Q8IVW4 592 aaPredicted RBP14.68□□□□□ -0.06
USP28-204ENST00000537642 SLC25A41Q8N5S1 370 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 UBL4BQ8N7F7 174 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 IPMKQ8NFU5 416 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 WDR48Q8TAF3 677 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 ZDHHC1Q8WTX9 485 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 GORASP1Q9BQQ3 440 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 SPATA16Q9BXB7 569 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 CDH19Q9H159 772 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 GBA3Q9H227 469 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 SYNDIG1Q9H7V2 258 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 VPS18Q9P253 973 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 NFKBIL1Q9UBC1 381 aaPredicted RBP14.68□□□□□ -0.06
USP28-204ENST00000537642 RSPH14Q9UHP6 348 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 ENTPD2Q9Y5L3 495 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 ADGRG1Q9Y653 693 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 RNF215Q9Y6U7 377 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 A0A1W2PNU3 283 aaPredicted RBP14.67□□□□□ -0.06
USP28-204ENST00000537642 A0A1W2PQM1 296 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 MIF4GDA9UHW6 222 aaKnown RBP14.67□□□□□ -0.06
USP28-204ENST00000537642 TLX3O43711 291 aaPredicted RBP14.67□□□□□ -0.06
USP28-204ENST00000537642 DNAJC6O75061 913 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 TJP3O95049 919 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 MPOP05164 745 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 BPIP17213 487 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 MAZP56270 477 aaKnown RBP14.67□□□□□ -0.06
USP28-204ENST00000537642 MPP3Q13368 585 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 SPIDRQ14159 915 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 SLC1A5Q15758 541 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 DARS2Q6PI48 645 aaKnown RBP14.67□□□□□ -0.06
USP28-204ENST00000537642 GALNT13Q8IUC8 556 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 Q8N9G6 341 aaPredicted RBP14.67□□□□□ -0.06
USP28-204ENST00000537642 PATE1Q8WXA2 126 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 ATXN7L3BQ96GX2 97 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 HES6Q96HZ4 224 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 SRPK1Q96SB4 655 aaKnown RBP14.67□□□□□ -0.06
USP28-204ENST00000537642 RAD18Q9NS91 495 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 LRIT1Q9P2V4 623 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 APPL1Q9UKG1 709 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 PRKAB1Q9Y478 270 aa14.67□□□□□ -0.06
USP28-204ENST00000537642 KCNN4O15554 427 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 NUDT21O43809 227 aaKnown RBP14.66□□□□□ -0.06
USP28-204ENST00000537642 ECEL1O95672 775 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 RPLP0P05388 317 aaKnown RBP14.66□□□□□ -0.06
USP28-204ENST00000537642 PNLIPP16233 465 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 ACTR1BP42025 376 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 ACTR1AP61163 376 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 GABREP78334 506 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 KLF1Q13351 362 aaPredicted RBP14.66□□□□□ -0.06
USP28-204ENST00000537642 ZNF569Q5MCW4 686 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 ANKRD20A2Q5SQ80 823 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 ZNF648Q5T619 568 aaPredicted RBP14.66□□□□□ -0.06
USP28-204ENST00000537642 ANKRD20A1Q5TYW2 823 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 ANKRD20A3Q5VUR7 823 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 ITPRIPL1Q6GPH6 555 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 SPRED1Q7Z699 444 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 CCNJLQ8IV13 435 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 NAGSQ8N159 534 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 TTC30BQ8N4P2 665 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 RNF10Q8N5U6 811 aaKnown RBP14.66□□□□□ -0.06
USP28-204ENST00000537642 TRAM1L1Q8N609 369 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 ZSCAN5AQ9BUG6 496 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 LRRN3Q9H3W5 708 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 TRABDQ9H4I3 376 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 BPIFA1Q9NP55 256 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 ARFGAP3Q9NP61 516 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 ZNHIT2Q9UHR6 403 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 ADAMTS20P59510 1910 aa14.66□□□□□ -0.06
USP28-204ENST00000537642 DSPP15924 2871 aaKnown RBP14.65□□□□□ -0.06
USP28-204ENST00000537642 D6RAR5 112 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 ARHGAP6O43182 974 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 AGTP01019 485 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 HLA-DPA1P20036 260 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 PSMB4P28070 264 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 HMGCLP35914 325 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 TNNT3P45378 269 aaPredicted RBP14.65□□□□□ -0.06
USP28-204ENST00000537642 LSSP48449 732 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 GEMP55040 296 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 B4GALNT1Q00973 533 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 PDPK2PQ6A1A2 396 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 B3GNT8Q7Z7M8 397 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 ARL14Q8N4G2 192 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 CCDC110Q8TBZ0 833 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 GLYATL1Q969I3 302 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 GRAMD1AQ96CP6 724 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 GFM1Q96RP9 751 aaKnown RBP14.65□□□□□ -0.06
USP28-204ENST00000537642 FERMT1Q9BQL6 677 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 FICDQ9BVA6 458 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 FSD1LQ9BXM9 530 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 TSGA10Q9BZW7 698 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 CARD9Q9H257 536 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 RMI1Q9H9A7 625 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 POLR1BQ9H9Y6 1135 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 ATXN10Q9UBB4 475 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 TMPRSS11EQ9UL52 423 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 GUCA1BQ9UMX6 200 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 SATB2Q9UPW6 733 aa14.65□□□□□ -0.06
USP28-204ENST00000537642 TCRBV7S2A1N4TA0A589 114 aa14.64□□□□□ -0.07
USP28-204ENST00000537642 PMS2P1A4D2B8 440 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms