RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MAN1A1P33908 653 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 NOP2P46087 812 aaKnown RBP14.62□□□□□ -0.07
VPS28-215ENST00000531924 SPINT3P49223 89 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 NIPAL4Q0D2K0 466 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 AP1B1Q10567 949 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 SRSF6Q13247 344 aaKnown RBP14.62□□□□□ -0.07
VPS28-215ENST00000531924 SNAP47Q5SQN1 464 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 CCDC70Q6NSX1 233 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 FAM129CQ86XR2 697 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 CPNE8Q86YQ8 564 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 IL22RA1Q8N6P7 574 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 PQLC3Q8N755 202 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 OR8K1Q8NGG5 319 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 ARRDC2Q8TBH0 407 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 SLC37A2Q8TED4 501 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 SH3KBP1Q96B97 665 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 HDAC11Q96DB2 347 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 COX14Q96I36 57 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 RNF157Q96PX1 679 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 ASPSCR1Q9BZE9 553 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 XPO4Q9C0E2 1151 aaKnown RBP14.62□□□□□ -0.07
VPS28-215ENST00000531924 RMI1Q9H9A7 625 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 SLC39A1Q9NY26 324 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 DTLQ9NZJ0 730 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 VPS18Q9P253 973 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 PRKAB1Q9Y478 270 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 ANKRD66B4E2M5 251 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 SLC28A2O43868 658 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 PRLP01236 227 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 SLC4A1P02730 911 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 FGF3P11487 239 aaPredicted RBP14.61□□□□□ -0.07
VPS28-215ENST00000531924 SFTPCP11686 197 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 ACP5P13686 325 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 PTMSP20962 102 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 KDELR1P24390 212 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 MAPK9P45984 424 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 FASLGP48023 281 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 HHEXQ03014 270 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 NFATC2Q13469 925 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 SQSTM1Q13501 440 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 TRIM14Q14142 442 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 QPCTQ16769 361 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 DCAF12Q5T6F0 453 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 TMEM71Q6P5X7 295 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 PRICKLE2Q7Z3G6 844 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 ZNF761Q86XN6 746 aaPredicted RBP14.61□□□□□ -0.07
VPS28-215ENST00000531924 PHYKPLQ8IUZ5 450 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 SFRP1Q8N474 314 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 RAPGEF5Q92565 580 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 EXTL1Q92935 676 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 ART4Q93070 314 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 FAF2Q96CS3 445 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 LYSMD1Q96S90 227 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 PACSIN1Q9BY11 444 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 RAD18Q9NS91 495 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 KCNK6Q9Y257 313 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 PCDHGA4Q9Y5G9 962 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 UNC13CQ8NB66 2214 aa14.61□□□□□ -0.07
VPS28-215ENST00000531924 EFCAB7A8K855 629 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 A8MU76 341 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 APOL1O14791 398 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 PPP1R12AO14974 1030 aaPredicted RBP14.6□□□□□ -0.07
VPS28-215ENST00000531924 TMEM253P0C7T8 217 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 THRAP10827 490 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 ZFXP17010 805 aaPredicted RBP14.6□□□□□ -0.07
VPS28-215ENST00000531924 HNRNPH3P31942 346 aaKnown RBP14.6□□□□□ -0.07
VPS28-215ENST00000531924 RAB15P59190 212 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 IFI35P80217 286 aaPredicted RBP14.6□□□□□ -0.07
VPS28-215ENST00000531924 PPIDQ08752 370 aaKnown RBP14.6□□□□□ -0.07
VPS28-215ENST00000531924 SLC10A2Q12908 348 aaPredicted RBP14.6□□□□□ -0.07
VPS28-215ENST00000531924 NFATC3Q12968 1075 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 GALNT3Q14435 633 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 IHHQ14623 411 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 PDK1Q15118 436 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 ZNF569Q5MCW4 686 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 ALS2CLQ60I27 953 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 LYSMD3Q7Z3D4 306 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 KDELC2Q7Z4H8 507 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 SLC9B2Q86UD5 537 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 DTX1Q86Y01 620 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 AVL9Q8NBF6 648 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 NCSTNQ92542 709 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 CCDC42Q96M95 316 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 AGAP3Q96P47 875 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 HERPUD2Q9BSE4 406 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 DDA1Q9BW61 102 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 SPATA16Q9BXB7 569 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.6□□□□□ -0.07
VPS28-215ENST00000531924 ZFYVE1Q9HBF4 777 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 PCDHGA3Q9Y5H0 932 aa14.6□□□□□ -0.07
VPS28-215ENST00000531924 OR5K4A6NMS3 321 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.59□□□□□ -0.07
VPS28-215ENST00000531924 GRID2O43424 1007 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 DNAJC6O75061 913 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 SLC25A14O95258 325 aaPredicted RBP14.59□□□□□ -0.07
VPS28-215ENST00000531924 KRT1P04264 644 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 TNNT1P13805 278 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 CSF2RBP32927 897 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 ARHGAP25P42331 645 aa14.59□□□□□ -0.07
VPS28-215ENST00000531924 TNNT3P45378 269 aaPredicted RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms