RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 C14orf28Q4W4Y0 310 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 ALS2CLQ60I27 953 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 DENND5AQ6IQ26 1287 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 SLC30A9Q6PML9 568 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 XKR5Q6UX68 686 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 ZNF574Q6ZN55 896 aaPredicted RBP10.57□□□□□ -0.72
CD44-227ENST00000528086 MARK2Q7KZI7 788 aaKnown RBP10.57□□□□□ -0.72
CD44-227ENST00000528086 SPRED1Q7Z699 444 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 ADGRG6Q86SQ4 1221 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 ZNF547Q8IVP9 402 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 ARL14Q8N4G2 192 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 ATL2Q8NHH9 583 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 NAT6Q93015 286 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 CCDC97Q96F63 343 aaPredicted RBP10.57□□□□□ -0.72
CD44-227ENST00000528086 FOXP3Q9BZS1 431 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 ZFYVE1Q9HBF4 777 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 BPIFA1Q9NP55 256 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 IL17CQ9P0M4 197 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 ATXN10Q9UBB4 475 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 SLC23A2Q9UGH3 650 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 FAM153AQ9UHL3 310 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 APPL1Q9UKG1 709 aa10.57□□□□□ -0.72
CD44-227ENST00000528086 ATXN7L1Q9ULK2 861 aaPredicted RBP10.57□□□□□ -0.72
CD44-227ENST00000528086 CCDC66A2RUB6 948 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 RGSL1A5PLK6 1076 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 D6RAR5 112 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 PDE2AO00408 941 aaPredicted RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 BUD23O43709 281 aaKnown RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 MTX2O75431 263 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 DXOO77932 396 aaKnown RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 EPOP01588 193 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 RBP3P10745 1247 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 HOXB3P14651 431 aaPredicted RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 GLB1P16278 677 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 ZNF8P17098 575 aaPredicted RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 PSMB4P28070 264 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 EIF2S3P41091 472 aaKnown RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 GDF10P55107 478 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 RWDD2BP57060 319 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 OR1D5P58170 312 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 DCDC1P59894 354 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 ZFP36L1Q07352 338 aaKnown RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 SLC1A5Q15758 541 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 KCTD19Q17RG1 926 aaPredicted RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 COL28A1Q2UY09 1125 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 HS1BP3Q53T59 392 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 ANKRD20A2Q5SQ80 823 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 ANKRD20A1Q5TYW2 823 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 ANKRD20A3Q5VUR7 823 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 RANBP10Q6VN20 620 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 PID1Q7Z2X4 250 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 KIAA1328Q86T90 577 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 CCNJLQ8IV13 435 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 SLITRK4Q8IW52 837 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 NDUFAF2Q8N183 169 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 SLC25A41Q8N5S1 370 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 Q8N9G6 341 aaPredicted RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 SNIP1Q8TAD8 396 aaKnown RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 SLC35B2Q8TB61 432 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 CCDC110Q8TBZ0 833 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 ZDHHC1Q8WTX9 485 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 NXPE2Q96DL1 559 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 DEPDC7Q96QD5 511 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 OR2M4Q96R27 311 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 ADGRE3Q9BY15 652 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 GBA3Q9H227 469 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 LRRN3Q9H3W5 708 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 DPEP2Q9H4A9 486 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 IL26Q9NPH9 171 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 NCKIPSDQ9NZQ3 722 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 VPS18Q9P253 973 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 KLHL8Q9P2G9 620 aaPredicted RBP10.56□□□□□ -0.72
CD44-227ENST00000528086 TBC1D29Q9UFV1 150 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 SATB2Q9UPW6 733 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 KCTD3Q9Y597 815 aa10.56□□□□□ -0.72
CD44-227ENST00000528086 CACNA1GO43497 2377 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 CDRT15L2A8MXV6 281 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 H7C0C1 242 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 CHUKO15111 745 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 NUDT21O43809 227 aaKnown RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 NUAK1O60285 661 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 TCEA3O75764 348 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 SLC4A1P02730 911 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 RPLP0P05388 317 aaKnown RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 HGFP14210 728 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 CA4P22748 312 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 NFKBIAP25963 317 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 CD1CP29017 333 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 CSF2RBP32927 897 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 HMGCLP35914 325 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 ATP5OP48047 213 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 LSSP48449 732 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 RPIAP49247 311 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 EIF3EP60228 445 aaKnown RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 GABREP78334 506 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 CCZ1BP86790 482 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 CCZ1P86791 482 aaPredicted RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 SIX1Q15475 284 aaPredicted RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 TBC1D25Q3MII6 688 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 ATP13A5Q4VNC0 1218 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms