RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SNRPD1P62314 119 aaKnown RBP11.65□□□□□ -0.54
SYNPO-204ENST00000519664 GLYATQ6IB77 296 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 PAQR3Q6TCH7 311 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 ZNF558Q96NG5 402 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 NPY6RQ99463 290 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 C16orf70Q9BSU1 422 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 SPG21Q9NZD8 308 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 GTF2IRD1Q9UHL9 959 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 FADS3Q9Y5Q0 445 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 CATP04040 527 aaKnown RBP11.65□□□□□ -0.54
SYNPO-204ENST00000519664 KCNQ1P51787 676 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 CYP4F2P78329 520 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 CYP4F3Q08477 520 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 FBXL22Q6P050 247 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 ERAP2Q6P179 960 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 GPR180Q86V85 440 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 ZC3HC1Q86WB0 502 aaKnown RBP11.65□□□□□ -0.54
SYNPO-204ENST00000519664 MYOCQ99972 504 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 CD84Q9UIB8 345 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 DOT1LQ8TEK3 1739 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 EPN2O95208 641 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 ALDOAP04075 364 aaKnown RBP11.65□□□□□ -0.54
SYNPO-204ENST00000519664 RRM2P31350 389 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 CDH5P33151 784 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-204ENST00000519664 XKR6Q5GH73 641 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 PERM1Q5SV97 790 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 GDF6Q6KF10 455 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-204ENST00000519664 FUT10Q6P4F1 479 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 TBC1D19Q8N5T2 526 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 SIDT2Q8NBJ9 832 aaKnown RBP11.65□□□□□ -0.54
SYNPO-204ENST00000519664 ACTRT2Q8TDY3 377 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 R3HDMLQ9H3Y0 253 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 FBRSL1Q9HCM7 1045 aaKnown RBP11.65□□□□□ -0.54
SYNPO-204ENST00000519664 GNPTGQ9UJJ9 305 aa11.65□□□□□ -0.54
SYNPO-204ENST00000519664 CNOT3O75175 753 aaKnown RBP11.65□□□□□ -0.55
SYNPO-204ENST00000519664 NIPSNAP2O75323 286 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 CLDN11O75508 207 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 SERPINI2O75830 405 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 CNTN5O94779 1100 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 CAPN1P07384 714 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 LINGO3P0C6S8 592 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 PRKCHP24723 683 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 POLR2LP62875 67 aaKnown RBP11.65□□□□□ -0.55
SYNPO-204ENST00000519664 PRKCZQ05513 592 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 SIM2Q14190 667 aaPredicted RBP11.65□□□□□ -0.55
SYNPO-204ENST00000519664 TCEAL1Q15170 157 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 FAM187BQ17R55 369 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 TMEM214Q6NUQ4 689 aaKnown RBP11.65□□□□□ -0.55
SYNPO-204ENST00000519664 TMC5Q6UXY8 1006 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 SATL1Q86VE3 508 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 ARL14EPQ8N8R7 260 aaPredicted RBP11.65□□□□□ -0.55
SYNPO-204ENST00000519664 OR2T12Q8NG77 320 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 GIPC3Q8TF64 312 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 UPF1Q92900 1129 aaKnown RBP eCLIP11.65□□□□□ -0.55
SYNPO-204ENST00000519664 SCLYQ96I15 445 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 TUBGCP5Q96RT8 1024 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 TMEM209Q96SK2 561 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 TXLNGYQ9BZA5 131 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 CCSER2Q9H7U1 834 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 PDLIM7Q9NR12 457 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 OXSMQ9NWU1 459 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 DUSP12Q9UNI6 340 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 TMA7Q9Y2S6 64 aaKnown RBP11.65□□□□□ -0.55
SYNPO-204ENST00000519664 PHRF1Q9P1Y6 1649 aaKnown RBP11.65□□□□□ -0.55
SYNPO-204ENST00000519664 CCDC88AQ3V6T2 1871 aa11.65□□□□□ -0.55
SYNPO-204ENST00000519664 MYO5AQ9Y4I1 1855 aaKnown RBP11.65□□□□□ -0.55
SYNPO-204ENST00000519664 MYH14Q7Z406 1995 aaKnown RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 TBC1D3BA6NDS4 549 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 OR6C75A6NL08 312 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 CYP7B1O75881 506 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 POLR2EP19388 210 aaKnown RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 TRIM25Q14258 630 aaKnown RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 TYW3Q6IPR3 259 aaKnown RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 GALNT5Q7Z7M9 940 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 ADHFE1Q8IWW8 467 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 PPP3R2Q96LZ3 170 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 REEP1Q9H902 201 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 KRT84Q9NSB2 600 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 RFXANKO14593 260 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 ADCY6O43306 1168 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 PRAMEF1O95521 474 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 YBEYP58557 167 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 LIPEQ05469 1076 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 CNPY1Q3B7I2 92 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 REP15Q6BDI9 236 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 ZC3H7AQ8IWR0 971 aaKnown RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 OXCT2Q9BYC2 517 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 CFAP97Q9P2B7 532 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 ADGRE2Q9UHX3 823 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 OR2AG2A6NM03 316 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 ACSL4O60488 711 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 UGT1A6P19224 532 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 UGT1A1P22309 533 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 UGT1A4P22310 534 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 UGT1A3P35503 534 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 UGT1A5P35504 534 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 CREB5Q02930 508 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 TNK2Q07912 1038 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 MOGSQ13724 837 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms