RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 P3H4Q92791 437 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PRMT1Q99873 361 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 CENPKQ9BS16 269 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 ISCUQ9H1K1 167 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 EBF2Q9HAK2 575 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 NEK6Q9HC98 313 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 RRN3Q9NYV6 651 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 FBXO4Q9UKT5 387 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 GPSM3Q9Y4H4 160 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 TUBB4AP04350 444 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 MPSTP25325 297 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PRKCIP41743 596 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 MSH2P43246 934 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 SERPINH1P50454 418 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 CAMK2BQ13554 666 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 ARHGEF7Q14155 803 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 KLC3Q6P597 504 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 EXOC3L1Q86VI1 746 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 ZBTB44Q8NCP5 570 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 CALML6Q8TD86 181 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 CXorf40AQ8TE69 158 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 DNAJC9Q8WXX5 260 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 MRGPRX3Q96LB0 322 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 HAPLN3Q96S86 360 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 DNAJC7Q99615 494 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PRRX2Q99811 253 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 KLHL25Q9H0H3 589 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 DPEP2Q9H4A9 486 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 WSB2Q9NYS7 404 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PTPRDP23468 1912 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 ADAMTS9Q9P2N4 1935 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 GOLGA8RI6L899 631 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 APOL1O14791 398 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 MCF2LO15068 1137 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 RASGRP1O95267 797 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ITGA2BP08514 1039 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 HSMCR30P0CW71 290 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 THEGLP0DJG4 465 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SKIV2L2P42285 1042 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 MMP13P45452 471 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 AP2B1P63010 937 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 PPIDQ08752 370 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 COX10Q12887 443 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 GRIK2Q13002 908 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ACAP1Q15027 740 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ANKRD20A8PQ5CZ79 823 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 FAM209AQ5JX71 171 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 FAM46CQ5VWP2 391 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ENPP7Q6UWV6 458 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 POLNQ7Z5Q5 900 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 GALNT7Q86SF2 657 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 PRPF39Q86UA1 669 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 BBS5Q8N3I7 341 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 DCAF4L2Q8NA75 395 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 NOA1Q8NC60 698 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 CAPSLQ8WWF8 208 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 LRRC45Q96CN5 670 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 MYO19Q96H55 970 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 FEM1CQ96JP0 617 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 CCDC77Q9BR77 488 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 AP1M1Q9BXS5 423 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 FAM129AQ9BZQ8 928 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 EPN3Q9H201 632 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ARMC7Q9H6L4 198 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 NOL6Q9H6R4 1146 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SLC35C2Q9NQQ7 365 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 COQ3Q9NZJ6 369 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 CIDEBQ9UHD4 219 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 BOD1L1Q8NFC6 3051 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 KCNN4O15554 427 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 KCNJ13O60928 360 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ZNF217O75362 1048 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 BAG2O95816 211 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 IGLV3-25P01717 112 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ITGAVP06756 1048 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ELFN1P0C7U0 828 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 KRT4P19013 534 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 CCND1P24385 295 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ADPRHP54922 357 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SULT2A1Q06520 285 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ATP1A4Q13733 1029 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 DPYSL3Q14195 570 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 CDKN3Q16667 212 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 MYLK3Q32MK0 819 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 AMZ1Q400G9 498 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 PMS2CLQ68D20 193 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 RAET1GQ6H3X3 334 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 Q6ZVL8 140 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 DET1Q7L5Y6 550 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SYT12Q8IV01 421 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SYNPOQ8N3V7 929 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 Q8N9G6 341 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SCAIQ8N9R8 606 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 IFT43Q96FT9 208 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 PFDN2Q9UHV9 154 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 AMFRQ9UKV5 643 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 BTBD3Q9Y2F9 522 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 A0A0J9YVX5 310 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms