RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 VWA5B1Q5TIE3 1220 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 THOC7Q6I9Y2 204 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 Q6ZNB5 142 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 UMODL1-AS1Q8N2C9 162 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 CPA6Q8N4T0 437 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ENDOVQ8N8Q3 282 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 Q8N9G6 341 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 C12orf50Q8NA57 414 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 SMRP1Q8NCR6 262 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 DDHD1Q8NEL9 900 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 MAFAQ8NHW3 353 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 NXPE3Q969Y0 559 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 TEKT5Q96M29 485 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 NUF2Q9BZD4 464 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 KCNK12Q9HB15 430 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 SMYD2Q9NRG4 433 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 SLC17A6Q9P2U8 582 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 C2orf16Q68DN1 1984 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 HTR3EA5X5Y0 456 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 PCP4L1A6NKN8 68 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 DRGXA6NNA5 263 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 LYPLA1O75608 230 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 UQCRBP14927 111 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 NAT1P18440 290 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 VARSP26640 1264 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 GJA4P35212 333 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ECT2LQ008S8 904 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 NIPAL4Q0D2K0 466 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 PRKD1Q15139 912 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 TAZQ16635 292 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 MROH9Q5TGP6 573 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 EGFLAMQ63HQ2 1017 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 C16orf46Q6P387 395 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 TRABD2AQ86V40 505 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 CRLF3Q8IUI8 442 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 GUCD1Q96NT3 240 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 MYOCQ99972 504 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 HEPHQ9BQS7 1158 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 INIPQ9NRY2 104 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ZC3H7BQ9UGR2 993 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ADAMTS6Q9UKP5 1117 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 NEU3Q9UQ49 428 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 AP4B1Q9Y6B7 739 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ATP5BP06576 529 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ALPIP09923 528 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ESRRGP62508 458 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 UBXN2BQ14CS0 331 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ITPRIPL2Q3MIP1 535 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 CHST15Q7LFX5 561 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ZNF683Q8IZ20 524 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 CHST14Q8NCH0 376 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 BBOF1Q8ND07 529 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ELMO1Q92556 727 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ART4Q93070 314 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ADA2Q9NZK5 511 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 BFARQ9NZS9 450 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 PIAS3Q9Y6X2 628 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 PRRT4C9JH25 899 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 GREM1O60565 184 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 PRAMEF11O60813 436 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 KRT75O95678 551 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 SH3BGRP55822 239 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 C21orf59P57076 290 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 CDK16Q00536 496 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 IL10RBQ08334 325 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 TRAF2Q12933 501 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 TMEM31Q5JXX7 168 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 RNASEH2BQ5TBB1 312 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 SLC2A7Q6PXP3 512 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 SETD3Q86TU7 594 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 APLFQ8IW19 511 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 PGBD5Q8N414 524 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 SUSD6Q92537 303 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 MARK4Q96L34 752 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 PAFAH2Q99487 392 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 S1PR5Q9H228 398 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 PRO3102Q9H379 93 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 SYBUQ9NX95 663 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 ZNF229Q9UJW7 825 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 COQ6Q9Y2Z9 468 aa8.65□□□□□ -1.02
LIMCH1-209ENST00000509277 MTSS1O43312 755 aa8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 MBTPS2O43462 519 aa8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 DCXO43602 365 aa8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 NUDT2P50583 147 aa8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 CCNG1P51959 295 aa8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 ZNF135P52742 658 aaPredicted RBP8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 TXNDC11Q6PKC3 985 aa8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 MFSD6LQ8IWD5 586 aa8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 MYO1HQ8N1T3 1032 aa8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 NECAB3Q96P71 396 aaPredicted RBP8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 HPS4Q9NQG7 708 aa8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 KCTD3Q9Y597 815 aa8.65□□□□□ -1.03
LIMCH1-209ENST00000509277 IGLV3-10A0A075B6K4 115 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 ANXA9O76027 345 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 KAT7O95251 611 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 ESRRBO95718 433 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 PXNP49023 591 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 BCL2L1Q07817 233 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 KCNC3Q14003 757 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 HNRNPDQ14103 355 aaKnown RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms