RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, human

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP54-208	ENST00000508604	KLHL20	Q9Y2M5	609 aa		2.58	□□□□□ -2
NUP54-208	ENST00000508604		A0A1W2PPI3	338 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604		A8MU10	97 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	SLCO1B7	G3V0H7	640 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	EGF	P01133	1207 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	TF	P02787	698 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	HEXA	P06865	529 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	CEACAM1	P13688	526 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	ACADS	P16219	412 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	GNAZ	P19086	355 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	EDN2	P20800	178 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	NR2F2	P24468	414 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	SHMT1	P34896	483 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	ARCN1	P48444	511 aa	Known RBP	2.57	□□□□□ -2
NUP54-208	ENST00000508604	TAS2R38	P59533	333 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	RPP30	P78346	268 aa	Known RBP	2.57	□□□□□ -2
NUP54-208	ENST00000508604	NAE1	Q13564	534 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	KIR2DS3	Q14952	304 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	MYLK3	Q32MK0	819 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	FFAR4	Q5NUL3	377 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	TDRP	Q86YL5	185 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	ERC1	Q8IUD2	1116 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	MRGPRD	Q8TDS7	321 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	STAM	Q92783	540 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	C18orf12	Q96KH6	178 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	FAM167B	Q9BTA0	163 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	IFIH1	Q9BYX4	1025 aa	Known RBP	2.57	□□□□□ -2
NUP54-208	ENST00000508604	VEZT	Q9HBM0	779 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	KLHL8	Q9P2G9	620 aa	Predicted RBP	2.57	□□□□□ -2
NUP54-208	ENST00000508604	FBXL2	Q9UKC9	423 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	AGRN	O00468	2067 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	ABHD14A-ACY1	A0A1B0GW23	586 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	PRR32	B1ATL7	298 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	HS3ST1	O14792	307 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	KLK10	O43240	276 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	TSPAN3	O60637	253 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	TRIM49	P0CI25	452 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	TRIM49C	P0CI26	452 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	GPD2	P43304	727 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	SNRPD1	P62314	119 aa	Known RBP	2.57	□□□□□ -2
NUP54-208	ENST00000508604	SPOCK1	Q08629	439 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	PEX6	Q13608	980 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	PRKG1	Q13976	671 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	KRTCAP3	Q53RY4	240 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	SIGIRR	Q6IA17	410 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	ZNF774	Q6NX45	483 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	JMJD6	Q6NYC1	403 aa	Predicted RBP	2.57	□□□□□ -2
NUP54-208	ENST00000508604	ZNF613	Q6PF04	617 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	RAD9B	Q6WBX8	426 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	2.57	□□□□□ -2
NUP54-208	ENST00000508604	CDC20B	Q86Y33	519 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	OR5R1	Q8NH85	324 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	GMPPA	Q96IJ6	420 aa	Predicted RBP	2.57	□□□□□ -2
NUP54-208	ENST00000508604	PRR34	Q9NV39	138 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	ATAD3A	Q9NVI7	634 aa		2.57	□□□□□ -2
NUP54-208	ENST00000508604	STK36	Q9NRP7	1315 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	IGLV7-46	A0A075B6I9	117 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	VWA3A	A6NCI4	1184 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	GALT	P07902	379 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	HMBS	P08397	361 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	SHC1	P29353	583 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	EFNB1	P98172	346 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	DCST1	Q5T197	706 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	C1orf228	Q6PIY5	440 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	TOGARAM2	Q6ZUX3	1019 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	DHX40	Q8IX18	779 aa	Known RBP	2.56	□□□□□ -2
NUP54-208	ENST00000508604	ZNF614	Q8N883	585 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	FAM110A	Q9BQ89	295 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	ECHDC1	Q9NTX5	307 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604	DISP3	Q9P2K9	1392 aa		2.56	□□□□□ -2
NUP54-208	ENST00000508604		F5H423	210 aa	Predicted RBP	2.55	□□□□□ -2
NUP54-208	ENST00000508604		H0YIN7	160 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	BUD23	O43709	281 aa	Known RBP	2.55	□□□□□ -2
NUP54-208	ENST00000508604	EML2	O95834	649 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	IGHV4-38-2	P0DP08	117 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	PRG2	P13727	222 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	TLX1	P31314	330 aa	Predicted RBP	2.55	□□□□□ -2
NUP54-208	ENST00000508604	ZNF667	Q5HYK9	610 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	ALS2CL	Q60I27	953 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	CACNA2D4	Q7Z3S7	1137 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	PIWIL4	Q7Z3Z4	852 aa	Known RBP	2.55	□□□□□ -2
NUP54-208	ENST00000508604	LONP2	Q86WA8	852 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	HMGCLL1	Q8TB92	370 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	RUFY2	Q8WXA3	655 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	PHF21A	Q96BD5	680 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	KLHL29	Q96CT2	875 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	SLC41A2	Q96JW4	573 aa		2.55	□□□□□ -2
NUP54-208	ENST00000508604	GOLGA6L10	A0A0M3HER8	536 aa		2.54	□□□□□ -2
NUP54-208	ENST00000508604	PRC1	O43663	620 aa		2.54	□□□□□ -2
NUP54-208	ENST00000508604	PLIN1	O60240	522 aa		2.54	□□□□□ -2
NUP54-208	ENST00000508604	TSHB	P01222	138 aa		2.54	□□□□□ -2
NUP54-208	ENST00000508604	GATA2	P23769	480 aa	Predicted RBP	2.54	□□□□□ -2
NUP54-208	ENST00000508604	GABRB2	P47870	512 aa		2.54	□□□□□ -2
NUP54-208	ENST00000508604	PAPOLA	P51003	745 aa	Known RBP	2.54	□□□□□ -2
NUP54-208	ENST00000508604	COG7	P83436	770 aa		2.54	□□□□□ -2
NUP54-208	ENST00000508604	TMEM81	Q6P7N7	255 aa		2.54	□□□□□ -2
NUP54-208	ENST00000508604	MFSD6	Q6ZSS7	791 aa		2.54	□□□□□ -2
NUP54-208	ENST00000508604	ANO5	Q75V66	913 aa		2.54	□□□□□ -2
NUP54-208	ENST00000508604	RRM2B	Q7LG56	351 aa		2.54	□□□□□ -2
NUP54-208	ENST00000508604	FTSJ3	Q8IY81	847 aa	Known RBP	2.54	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms