RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 DPPA5A6NC42 116 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 H0Y626 953 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 UBFD1O14562 309 aaKnown RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 ADAM12O43184 909 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 KLK8O60259 260 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 SNX2O60749 519 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 PQBP1O60828 265 aaKnown RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 CLASP2O75122 1294 aaKnown RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 SORBS2O94875 1100 aaKnown RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 CDK14O94921 469 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 MATN4O95460 622 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 KLKB1P03952 638 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 URODP06132 367 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 C8BP07358 591 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 LYNP07948 512 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 RPS17P08708 135 aaKnown RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 MTHFD2P13995 350 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 LBPP18428 481 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 RGRP47804 291 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 ERFP50548 548 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 EPHB3P54753 998 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 PKNOX1P55347 436 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 IL2P60568 153 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 RHOAP61586 193 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 CLCQ05315 142 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 FOXM1Q08050 763 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 TRIM25Q14258 630 aaKnown RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 PTPRNQ16849 979 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 TRIM60Q495X7 471 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 C1orf53Q5VUE5 145 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 CXorf57Q6NSI4 855 aaKnown RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 PAQR3Q6TCH7 311 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 DCAF4L2Q8NA75 395 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 SHKBP1Q8TBC3 707 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 UCMAQ8WVF2 138 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 PBXIP1Q96AQ6 731 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 LRCH3Q96II8 777 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 ZNF558Q96NG5 402 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 HOPXQ9BPY8 73 aaPredicted RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 CLSTN3Q9BQT9 956 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 CCDC167Q9P0B6 97 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 LSM7Q9UK45 103 aaKnown RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 CNOT11Q9UKZ1 510 aaKnown RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 RAB26Q9ULW5 256 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 ZNF510Q9Y2H8 683 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 PCDHGA7Q9Y5G6 932 aa11.91□□□□□ -0.5
NUP54-202ENST00000502850 RANBP2P49792 3224 aaKnown RBP11.91□□□□□ -0.5
NUP54-202ENST00000502850 ZNF106Q9H2Y7 1883 aaKnown RBP11.9□□□□□ -0.5
NUP54-202ENST00000502850 COL4A6Q14031 1691 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 E5RI56 91 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 PRRG1O14668 218 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 ACOT8O14734 319 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 ANGPT2O15123 496 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 SEC24AO95486 1093 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 PRLP01236 227 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 F11P03951 625 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 MBL2P11226 248 aaPredicted RBP11.9□□□□□ -0.5
NUP54-202ENST00000502850 PIM1P11309 404 aaPredicted RBP11.9□□□□□ -0.5
NUP54-202ENST00000502850 EEF1DP29692 281 aaKnown RBP11.9□□□□□ -0.5
NUP54-202ENST00000502850 SH3BP2P78314 561 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 MRPS22P82650 360 aaKnown RBP11.9□□□□□ -0.5
NUP54-202ENST00000502850 ARF5P84085 180 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 CACNG1Q06432 222 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 RAB33AQ14088 237 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 IKBKEQ14164 716 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 PTPRCAPQ14761 206 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 LRIT3Q3SXY7 679 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 UGT3A2Q3SY77 523 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 SPOUT1Q5T280 376 aaKnown RBP11.9□□□□□ -0.5
NUP54-202ENST00000502850 LYPLAL1Q5VWZ2 237 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 CLEC6AQ6EIG7 209 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 OGFOD2Q6N063 350 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 RETSATQ6NUM9 610 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 CNKSR3Q6P9H4 555 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 ANKRD33Q7Z3H0 272 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 SPATA24Q86W54 205 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 DDIASQ8IXT1 998 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 GPR65Q8IYL9 337 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 TTC30BQ8N4P2 665 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 MDGA1Q8NFP4 955 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 OR56A4Q8NGH8 313 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 EXOC2Q96KP1 924 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 GPR21Q99679 349 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 C2orf49Q9BVC5 232 aaPredicted RBP11.9□□□□□ -0.5
NUP54-202ENST00000502850 EBF3Q9H4W6 596 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 MAGEE1Q9HCI5 957 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 RIC8BQ9NVN3 520 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 GID8Q9NWU2 228 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 NUDT4Q9NZJ9 180 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 FAM50BQ9Y247 325 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 DNAJC15Q9Y5T4 150 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 SLC30A1Q9Y6M5 507 aa11.9□□□□□ -0.5
NUP54-202ENST00000502850 TET1Q8NFU7 2136 aa11.9□□□□□ -0.51
NUP54-202ENST00000502850 LTBP2Q14767 1821 aa11.9□□□□□ -0.51
NUP54-202ENST00000502850 CXorf51AA0A1B0GTR3 108 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 PRSS51A0A1B0GVH4 220 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 H0YJX3 145 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 H3BMM5 538 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 PIP5K1BO14986 540 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TRIM24O15164 1050 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms