RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 PSKH2Q96QS6 385 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 AGAP2Q99490 1192 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 SLC29A3Q9BZD2 475 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 ABCG8Q9H221 673 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 EPB41L1Q9H4G0 881 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 STN1Q9H668 368 aaKnown RBP16.31■□□□□ 0.2
VIM-208ENST00000497849 ANO10Q9NW15 660 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 LNPEPQ9UIQ6 1025 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 NOCTQ9UK39 431 aaKnown RBP16.31■□□□□ 0.2
VIM-208ENST00000497849 PRKAB1Q9Y478 270 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 ZFHX3Q15911 3703 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 PDZD2O15018 2839 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 DNAJC6O75061 913 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 SPAG6O75602 509 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 CPP00450 1065 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 CYP2A6P11509 494 aaPredicted RBP16.3■□□□□ 0.2
VIM-208ENST00000497849 FGF5P12034 268 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 PRF1P14222 555 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 SEPHS1P49903 392 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 CCL11P51671 97 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 STX1AQ16623 288 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 UGT8Q16880 541 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 KLHDC7AQ5VTJ3 777 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 SLC9B2Q86UD5 537 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 ARHGAP12Q8IWW6 846 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 LZTR1Q8N653 840 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 THAP4Q8WY91 577 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 SCAMP4Q969E2 229 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 AP2M1Q96CW1 435 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 C19orf60Q96EN9 201 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 COX14Q96I36 57 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.3■□□□□ 0.2
VIM-208ENST00000497849 BRD8Q9H0E9 1235 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 AKIRIN1Q9H9L7 192 aaPredicted RBP16.3■□□□□ 0.2
VIM-208ENST00000497849 CNOT8Q9UFF9 292 aaKnown RBP16.3■□□□□ 0.2
VIM-208ENST00000497849 RWDD2AQ9UIY3 292 aa16.3■□□□□ 0.2
VIM-208ENST00000497849 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.29■□□□□ 0.2
VIM-208ENST00000497849 ARGFXA6NJG6 315 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 C21orf140B9A014 251 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 SOCS5O75159 536 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 TIAF1O95411 115 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 CBX6O95503 412 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 CHRNB2P17787 502 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 NFKBIAP25963 317 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 GRNP28799 593 aaKnown RBP16.29■□□□□ 0.2
VIM-208ENST00000497849 MTIF2P46199 727 aaKnown RBP16.29■□□□□ 0.2
VIM-208ENST00000497849 TPI1P60174 286 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 RPS18P62269 152 aaKnown RBP16.29■□□□□ 0.2
VIM-208ENST00000497849 FMO1Q01740 532 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 SLC10A7Q0GE19 358 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 LAMB3Q13751 1172 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 RFTN1Q14699 578 aaPredicted RBP16.29■□□□□ 0.2
VIM-208ENST00000497849 ANO6Q4KMQ2 910 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 CHST15Q7LFX5 561 aaPredicted RBP16.29■□□□□ 0.2
VIM-208ENST00000497849 SCRN2Q96FV2 425 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 C5orf34Q96MH7 638 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 MCCC1Q96RQ3 725 aaPredicted RBP16.29■□□□□ 0.2
VIM-208ENST00000497849 MFRPQ9BY79 579 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 ING2Q9H160 280 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 SP110Q9HB58 689 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 SLAMF7Q9NQ25 335 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 ACSS2Q9NR19 701 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 MAP10Q9P2G4 905 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 CPNE7Q9UBL6 633 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 ZNHIT2Q9UHR6 403 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 PHTF1Q9UMS5 762 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 KCNK6Q9Y257 313 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 SLC5A6Q9Y289 635 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 CROCCQ5TZA2 2017 aa16.29■□□□□ 0.2
VIM-208ENST00000497849 POLEQ07864 2286 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 A0A1W2PQ67 120 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 LILRA5A6NI73 299 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 F8VZ95 297 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 TOX3O15405 576 aaPredicted RBP16.28■□□□□ 0.2
VIM-208ENST00000497849 KRT86O43790 486 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 CEACAM4O75871 244 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 MT-ND3P03897 115 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 F3P13726 295 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 LEPRP48357 1165 aaKnown RBP16.28■□□□□ 0.2
VIM-208ENST00000497849 AIF1P55008 147 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 GSCP56915 257 aaPredicted RBP16.28■□□□□ 0.2
VIM-208ENST00000497849 CDR2Q01850 454 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 IL10RBQ08334 325 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 TRAF2Q12933 501 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 IL10RAQ13651 578 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 NR6A1Q15406 480 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 CHRNA6Q15825 494 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 MAN2A1Q16706 1144 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.28■□□□□ 0.2
VIM-208ENST00000497849 SLC6A19Q695T7 634 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 ZNF677Q86XU0 584 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 NPWQ8N729 165 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 RBMXL3Q8N7X1 1067 aaKnown RBP16.28■□□□□ 0.2
VIM-208ENST00000497849 TGM7Q96PF1 710 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 SMIM14Q96QK8 99 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 HERPUD2Q9BSE4 406 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 SELENOOQ9BVL4 669 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 GPATCH2LQ9NWQ4 482 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 ZNF451Q9Y4E5 1061 aa16.28■□□□□ 0.2
VIM-208ENST00000497849 SLC30A1Q9Y6M5 507 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms