RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 SH3BP2P78314 561 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 BST2Q10589 180 aaKnown RBP11.65□□□□□ -0.54
HDAC4-210ENST00000493582 KCNAB2Q13303 367 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 LAPTM5Q13571 262 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 PKDCCQ504Y2 493 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 WDR45BQ5MNZ6 344 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 TTC23Q5W5X9 447 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 SIGIRRQ6IA17 410 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 CCBE1Q6UXH8 406 aaPredicted RBP11.65□□□□□ -0.54
HDAC4-210ENST00000493582 LINC00299Q6ZSB3 139 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 P2RY8Q86VZ1 359 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 ZDHHC13Q8IUH4 622 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 IQCF2Q8IXL9 164 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 NSUN6Q8TEA1 469 aaKnown RBP11.65□□□□□ -0.54
HDAC4-210ENST00000493582 ELMO1Q92556 727 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 SPATA17Q96L03 361 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 UBXN10Q96LJ8 280 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 KCNA7Q96RP8 456 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 MBOAT4Q96T53 435 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 CDT1Q9H211 546 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 PRDM8Q9NQV8 689 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 G3V2T6 193 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 FAM72CH0Y354 149 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 PIP5K1BO14986 540 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 HGFP14210 728 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 ITGB6P18564 788 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 PSMB9P28065 219 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 MTHFRP42898 656 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 ATP4BP51164 291 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 MRPS15P82914 257 aaKnown RBP11.65□□□□□ -0.55
HDAC4-210ENST00000493582 ZNF789Q5FWF6 425 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 SNAP47Q5SQN1 464 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 FAM72AQ5TYM5 149 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 GLYATQ6IB77 296 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 FAM72DQ6L9T8 149 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 FKBP9P1Q75LS8 142 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 C11orf74Q86VG3 221 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 FAM72BQ86X60 149 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 PTRH1Q86Y79 214 aaKnown RBP11.65□□□□□ -0.55
HDAC4-210ENST00000493582 LACC1Q8IV20 430 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 RIMKLAQ8IXN7 391 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 DCP1BQ8IZD4 617 aaKnown RBP11.65□□□□□ -0.55
HDAC4-210ENST00000493582 BEND7Q8N7W2 519 aaPredicted RBP11.65□□□□□ -0.55
HDAC4-210ENST00000493582 ASCC1Q8N9N2 400 aaKnown RBP11.65□□□□□ -0.55
HDAC4-210ENST00000493582 ZNF555Q8NEP9 628 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 MCFD2Q8NI22 146 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 PHF10Q8WUB8 498 aaKnown RBP11.65□□□□□ -0.55
HDAC4-210ENST00000493582 EXT2Q93063 718 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 TUBGCP3Q96CW5 907 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 NIFKQ9BYG3 293 aaKnown RBP11.65□□□□□ -0.55
HDAC4-210ENST00000493582 NECTIN3Q9NQS3 549 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 INTS7Q9NVH2 962 aaKnown RBP11.65□□□□□ -0.55
HDAC4-210ENST00000493582 ERVK-18Q9QC07 812 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 INVSQ9Y283 1065 aa11.65□□□□□ -0.55
HDAC4-210ENST00000493582 ZNF638Q14966 1978 aaKnown RBP11.64□□□□□ -0.55
HDAC4-210ENST00000493582 A8MV72 311 aaPredicted RBP11.64□□□□□ -0.55
HDAC4-210ENST00000493582 VWA5AO00534 786 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 LINC00032P0C843 101 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 ZNF470Q6ECI4 717 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 OTOP3Q7RTS5 596 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 KDELC2Q7Z4H8 507 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 ZBTB8OSQ8IWT0 167 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 SUN5Q8TC36 379 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 ANKRD49Q8WVL7 239 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 FAM149B1Q96BN6 582 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 LGALS12Q96DT0 336 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 ATG4CQ96DT6 458 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 AURKBQ96GD4 344 aaPredicted RBP11.64□□□□□ -0.55
HDAC4-210ENST00000493582 PCYT2Q99447 389 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 MRPL45Q9BRJ2 306 aaKnown RBP11.64□□□□□ -0.55
HDAC4-210ENST00000493582 NSMCE4AQ9NXX6 385 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 BTRCQ9Y297 605 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 NUP205Q92621 2012 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 SCN9AQ15858 1988 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 A0A087WZ62 844 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 ASPDHA6ND91 283 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 LRRC14BA6NHZ5 514 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 NTRK1P04629 796 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 STAG3L1P0CL83 205 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 ARNTP27540 789 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 NOS2P35228 1153 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 ISL1P61371 349 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 INCA1Q0VD86 236 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 CDH17Q12864 832 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 TARBP2Q15633 366 aaKnown RBP11.64□□□□□ -0.55
HDAC4-210ENST00000493582 UGP2Q16851 508 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 CEP78Q5JTW2 689 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 SLX4IPQ5VYV7 408 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 XRRA1Q6P2D8 792 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 BLOC1S3Q6QNY0 202 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 SPATA22Q8NHS9 363 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 FAM151AQ8WW52 585 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 ZNF300Q96RE9 604 aaPredicted RBP11.64□□□□□ -0.55
HDAC4-210ENST00000493582 GAD1Q99259 594 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 OR2B2Q9GZK3 357 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 ALG9Q9H6U8 611 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 MINDY3Q9H8M7 445 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 SLC52A3Q9NQ40 469 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 DPP3Q9NY33 737 aa11.64□□□□□ -0.55
HDAC4-210ENST00000493582 MOSPD1Q9UJG1 213 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms