RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TUSC3Q13454 348 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 CRTC3Q6UUV7 619 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 DEF8Q6ZN54 512 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 TCAIMQ8N3R3 496 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 STYXQ8WUJ0 223 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 ROPN1LQ96C74 230 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 PRDM8Q9NQV8 689 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 NCKAP1Q9Y2A7 1128 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 COQ6Q9Y2Z9 468 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 COQ4Q9Y3A0 265 aa16.38■□□□□ 0.21
COL7A1-210ENST00000487017 TSPAN1O60635 241 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 CLDN11O75508 207 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 GPIP06744 558 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 RPS9P46781 194 aaKnown RBP16.37■□□□□ 0.21
COL7A1-210ENST00000487017 MTAPQ13126 283 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 ERICH5Q6P6B1 374 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 BTN2A1Q7KYR7 527 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 SIX5Q8N196 739 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 LRTOMTQ8WZ04 291 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 MAF1Q9H063 256 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 IGFLR1Q9H665 355 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 H7C0S8 307 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 PMM2O15305 246 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 MMP3P08254 477 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 THRBP10828 461 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 RHOQP17081 205 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 NMBRP28336 390 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 ICAM3P32942 547 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 MAPKAPK2P49137 400 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 CPTPQ5TA50 214 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 CBR4Q8N4T8 237 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 CLP1Q92989 425 aaKnown RBP16.37■□□□□ 0.21
COL7A1-210ENST00000487017 CENPNQ96H22 339 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-210ENST00000487017 AGAP2Q99490 1192 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 ALG2Q9H553 416 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 WASF2Q9Y6W5 498 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 IGFBP5P24593 272 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 CCT3P49368 545 aaKnown RBP16.37■□□□□ 0.21
COL7A1-210ENST00000487017 CLCQ05315 142 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 MBTD1Q05BQ5 628 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 CFAP52Q8N1V2 620 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 KLRG1Q96E93 195 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 TSSK3Q96PN8 268 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 GALNT8Q9NY28 637 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 AFDNP55196 1824 aaKnown RBP16.37■□□□□ 0.21
COL7A1-210ENST00000487017 GPR25O00155 361 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 BCKDKO14874 412 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 NPHS1O60500 1241 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 NDST3O95803 873 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 LCP2Q13094 533 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 ZNHIT3Q15649 155 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-210ENST00000487017 NANOGNBQ7Z5D8 188 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 PIH1D2Q8WWB5 315 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 CXCR3P49682 368 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 AQP4P55087 323 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 DUSP28Q4G0W2 176 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 GALNT5Q7Z7M9 940 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 EEF1AKMT1Q8WVE0 214 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 SLCO2A1Q92959 643 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 GPR21Q99679 349 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 ASAH2Q9NR71 780 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 CMTM6Q9NX76 183 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 NUDT4Q9NZJ9 180 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 PDP1Q9P0J1 537 aaPredicted RBP16.37■□□□□ 0.21
COL7A1-210ENST00000487017 NFAT5O94916 1531 aa16.37■□□□□ 0.21
COL7A1-210ENST00000487017 ELOVL7A1L3X0 281 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 LRRC14BA6NHZ5 514 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 POM121L1PQ3SYA9 428 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 DCAF12L1Q5VU92 463 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 OLFML1Q6UWY5 402 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 FAM220AQ7Z4H9 259 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 DQX1Q8TE96 717 aaKnown RBP16.36■□□□□ 0.21
COL7A1-210ENST00000487017 CLIP3Q96DZ5 547 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 POMPQ9Y244 141 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 MRPS7Q9Y2R9 242 aaKnown RBP16.36■□□□□ 0.21
COL7A1-210ENST00000487017 FAM149AA5PLN7 773 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 DNAJA2O60884 412 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 SLC25A14O95258 325 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-210ENST00000487017 TRBC1P01850 177 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 NR2F6P10588 404 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 L1CAMP32004 1257 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 CAPGP40121 348 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 BIKQ13323 160 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 NIPA2Q8N8Q9 360 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 SLC25A51Q9H1U9 297 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 EBF3Q9H4W6 596 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 TAS2R1Q9NYW7 299 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 IFT80Q9P2H3 777 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-210ENST00000487017 FZD10Q9ULW2 581 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 CAMTA1Q9Y6Y1 1673 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 CYP3A5P20815 502 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 CREMQ03060 361 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 PDPRQ8NCN5 879 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 PCDH19Q8TAB3 1148 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 RPRD1BQ9NQG5 326 aaKnown RBP16.36■□□□□ 0.21
COL7A1-210ENST00000487017 KCTD5Q9NXV2 234 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.36■□□□□ 0.21
COL7A1-210ENST00000487017 AP3D1O14617 1153 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 MATN3O15232 486 aa16.36■□□□□ 0.21
COL7A1-210ENST00000487017 RGS10O43665 173 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms