RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 ZNHIT2Q9UHR6 403 aa12.49□□□□□ -0.41
SKA3-206ENST00000475251 CD84Q9UIB8 345 aa12.49□□□□□ -0.41
SKA3-206ENST00000475251 TTC24A2A3L6 582 aaPredicted RBP12.48□□□□□ -0.41
SKA3-206ENST00000475251 LILRA5A6NI73 299 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 TTLL8A6PVC2 850 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 H3BRJ5 948 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 MT-ND3P03897 115 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 ATP1A3P13637 1013 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 F3P13726 295 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 SERPINB6P35237 376 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 ARL4AP40617 200 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 MMP13P45452 471 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 PMS2P54278 862 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 CDH6P55285 790 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 DPYSQ14117 519 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 ERV3-1Q14264 604 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 IL11RAQ14626 422 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 MARC1Q5VT66 337 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 TMCO3Q6UWJ1 677 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 CHST15Q7LFX5 561 aaPredicted RBP12.48□□□□□ -0.41
SKA3-206ENST00000475251 LYSMD3Q7Z3D4 306 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 TRIM74Q86UV6 250 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 PHYKPLQ8IUZ5 450 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 ATPAF2Q8N5M1 289 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 ANKRD20A12PQ8NF67 263 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 SSC4DQ8WTU2 575 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 CLSTN2Q9H4D0 955 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 HAUS2Q9NVX0 235 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 CUEDC1Q9NWM3 386 aaPredicted RBP12.48□□□□□ -0.41
SKA3-206ENST00000475251 SIDT1Q9NXL6 827 aaKnown RBP12.48□□□□□ -0.41
SKA3-206ENST00000475251 CROTQ9UKG9 612 aa12.48□□□□□ -0.41
SKA3-206ENST00000475251 MRPS18BQ9Y676 258 aaKnown RBP12.48□□□□□ -0.41
SKA3-206ENST00000475251 USP9YO00507 2555 aaPredicted RBP12.48□□□□□ -0.41
SKA3-206ENST00000475251 TEX15Q9BXT5 2789 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 EPHB6O15197 1021 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 KATNA1O75449 491 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 CTPS1P17812 591 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 NR1D1P20393 614 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 CA4P22748 312 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 EPHB1P54762 984 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 MAMLD1Q13495 774 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 KRT31Q15323 416 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 CAPRIN2Q6IMN6 1127 aaKnown RBP12.47□□□□□ -0.41
SKA3-206ENST00000475251 RASGRP3Q8IV61 690 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 APLFQ8IW19 511 aaPredicted RBP12.47□□□□□ -0.41
SKA3-206ENST00000475251 PGBD5Q8N414 524 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 ENOX1Q8TC92 643 aaKnown RBP12.47□□□□□ -0.41
SKA3-206ENST00000475251 CPT1CQ8TCG5 803 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 FNIP1Q8TF40 1166 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 PIH1D2Q8WWB5 315 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 SCAMP4Q969E2 229 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 C9orf72Q96LT7 481 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 PEBP4Q96S96 227 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 UCK1Q9HA47 277 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 CWC15Q9P013 229 aaKnown RBP12.47□□□□□ -0.41
SKA3-206ENST00000475251 CPNE7Q9UBL6 633 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 TBC1D29Q9UFV1 150 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 TLK1Q9UKI8 766 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 SIK3Q9Y2K2 1263 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 PCDHGA6Q9Y5G7 932 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 NBASA2RRP1 2371 aa12.47□□□□□ -0.41
SKA3-206ENST00000475251 A0A0J9YYE9 177 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 CDC14CA4D256 554 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 MAFKO60675 156 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 DNAJC6O75061 913 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 CREG1O75629 220 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 NDUFA10O95299 355 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 EML2O95834 649 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 PEX11BO96011 259 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 TRBC1P01850 177 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 C9P02748 559 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 ACP5P13686 325 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 FERP16591 822 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 CES1P23141 567 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 F8A1P23610 371 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 MIPP30301 263 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 CASP14P31944 242 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 GARSP41250 739 aaKnown RBP12.46□□□□□ -0.41
SKA3-206ENST00000475251 STC1P52823 247 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 MAXP61244 160 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 PTSQ03393 145 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 PLEKHA7Q6IQ23 1121 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 LRRC49Q8IUZ0 686 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 GALNT6Q8NCL4 622 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 OR6C1Q96RD1 312 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 RIOK2Q9BVS4 552 aaKnown RBP12.46□□□□□ -0.41
SKA3-206ENST00000475251 POLR1EQ9GZS1 481 aaKnown RBP12.46□□□□□ -0.41
SKA3-206ENST00000475251 TWSG1Q9GZX9 223 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 ZNF768Q9H5H4 540 aaKnown RBP12.46□□□□□ -0.41
SKA3-206ENST00000475251 PADI1Q9ULC6 663 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 KCNK6Q9Y257 313 aa12.46□□□□□ -0.41
SKA3-206ENST00000475251 OAS3Q9Y6K5 1087 aaKnown RBP12.46□□□□□ -0.41
SKA3-206ENST00000475251 PIPSLA2A3N6 862 aa12.45□□□□□ -0.42
SKA3-206ENST00000475251 A6NCN8 305 aa12.45□□□□□ -0.42
SKA3-206ENST00000475251 GOLGA6L3A6NEY3 463 aa12.45□□□□□ -0.42
SKA3-206ENST00000475251 GPR89AB7ZAQ6 455 aa12.45□□□□□ -0.42
SKA3-206ENST00000475251 C21orf140B9A014 251 aa12.45□□□□□ -0.42
SKA3-206ENST00000475251 K7EM74 188 aa12.45□□□□□ -0.42
SKA3-206ENST00000475251 FZD6O60353 706 aa12.45□□□□□ -0.42
SKA3-206ENST00000475251 SNX2O60749 519 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms