RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 CD1EP15812 388 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 MRPL19P49406 292 aaKnown RBP9.75□□□□□ -0.85
USP39-214ENST00000474572 EPHB1P54762 984 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 PTPN5P54829 565 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 ERVFC1P60507 584 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 SLC34A1Q06495 639 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 BCL2L1Q07817 233 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 CDC16Q13042 620 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 PPIGQ13427 754 aaKnown RBP eCLIP9.75□□□□□ -0.855e-9■■■□□ 18.6
USP39-214ENST00000474572 CYLC2Q14093 348 aaPredicted RBP9.75□□□□□ -0.85
USP39-214ENST00000474572 SQLEQ14534 574 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 PTPRRQ15256 657 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 RCN1Q15293 331 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 ZRANB3Q5FWF4 1079 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 PITRM1Q5JRX3 1037 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 LYPLAL1Q5VWZ2 237 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 KANK2Q63ZY3 851 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 TMEM198Q66K66 360 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 UGT3A1Q6NUS8 523 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 TXNDC11Q6PKC3 985 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 C16orf89Q6UX73 402 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 LARP4Q71RC2 724 aaKnown RBP eCLIP9.75□□□□□ -0.85
USP39-214ENST00000474572 RPS27LQ71UM5 84 aaKnown RBP9.75□□□□□ -0.85
USP39-214ENST00000474572 RAB44Q7Z6P3 723 aaPredicted RBP9.75□□□□□ -0.85
USP39-214ENST00000474572 KIAA0907Q7Z7F0 614 aaPredicted RBP9.75□□□□□ -0.85
USP39-214ENST00000474572 SNX32Q86XE0 403 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 PHYKPLQ8IUZ5 450 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 CLYBLQ8N0X4 340 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 PGAM4Q8N0Y7 254 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 OR2AP1Q8NGE2 309 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 RIN3Q8TB24 985 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 ZNF483Q8TF39 744 aaPredicted RBP9.75□□□□□ -0.85
USP39-214ENST00000474572 SLC22A17Q8WUG5 538 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.75□□□□□ -0.85
USP39-214ENST00000474572 FUBP1Q96AE4 644 aaKnown RBP9.75□□□□□ -0.85
USP39-214ENST00000474572 GPR63Q9BZJ6 419 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 TM6SF2Q9BZW4 377 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 CEP44Q9C0F1 390 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 NDE1Q9NXR1 346 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 GALPQ9UBC7 116 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 EVLQ9UI08 416 aaPredicted RBP9.75□□□□□ -0.85
USP39-214ENST00000474572 FAM50BQ9Y247 325 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 DHRS7Q9Y394 339 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 PKP3Q9Y446 797 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 SLC30A1Q9Y6M5 507 aa9.75□□□□□ -0.85
USP39-214ENST00000474572 BPTFQ12830 3046 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 LOC100653049A0A140TA62 436 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 H0Y3Z8 333 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 CDC7O00311 574 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 PRMT5O14744 637 aaPredicted RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 SKAP2O75563 359 aaPredicted RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 KRT34O76011 436 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 CYBBP04839 570 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 ALPIP09923 528 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 GJA1P17302 382 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 HLA-FP30511 346 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 BMPR1AP36894 532 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 VHLP40337 213 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 PSMD8P48556 350 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 PTDSS1P48651 473 aaKnown RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 ACADVLP49748 655 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 CLCN7P51798 805 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 SH3BP2P78314 561 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 UBE3AQ05086 875 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 TBL3Q12788 808 aaKnown RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 MAPRE2Q15555 327 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 TSNQ15631 228 aaKnown RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 ZNF77Q15935 545 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 FUT11Q495W5 492 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 PPM1LQ5SGD2 360 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 TMEM240Q5SV17 173 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 C22orf39Q6P5X5 142 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 SNX20Q7Z614 316 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 UBE2Q1Q7Z7E8 422 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 ZSWIM9Q86XI8 627 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 CAMK1DQ8IU85 385 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 PLPP6Q8IY26 295 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 DEFB107AQ8IZN7 70 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 FBXW8Q8N3Y1 598 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 FBXO39Q8N4B4 442 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 MRPL43Q8N983 215 aaKnown RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 ZNF557Q8N988 423 aaPredicted RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 KYQ8NBH2 561 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 LEMD2Q8NC56 503 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 STMN2Q93045 179 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 ZNF570Q96NI8 536 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 MCCC1Q96RQ3 725 aaPredicted RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 TCF25Q9BQ70 676 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 CORO1BQ9BR76 489 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 CPEB1Q9BZB8 566 aaKnown RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 ATP13A3Q9H7F0 1226 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 ZFYVE1Q9HBF4 777 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 BPIFA1Q9NP55 256 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 UTP6Q9NYH9 597 aaKnown RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 MARK1Q9P0L2 795 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 TRMT6Q9UJA5 497 aaKnown RBP9.74□□□□□ -0.85
USP39-214ENST00000474572 APPL1Q9UKG1 709 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 ANGPTL2Q9UKU9 493 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 SARDHQ9UL12 918 aa9.74□□□□□ -0.85
USP39-214ENST00000474572 RNF112Q9ULX5 631 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms