RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ISL1P61371 349 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 TSTQ16762 297 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 SIRPB2Q5JXA9 342 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 TRNP1Q6NT89 227 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 ITIH6Q6UXX5 1313 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 DSELQ8IZU8 1212 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 PLD5Q8N7P1 536 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 SCCPDHQ8NBX0 429 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 TNIP2Q8NFZ5 429 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 UCMAQ8WVF2 138 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 ST6GAL2Q96JF0 529 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 C7orf26Q96N11 449 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 MPHOSPH8Q99549 860 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 SLC32A1Q9H598 525 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 PDZD7Q9H5P4 517 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 VEZTQ9HBM0 779 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 FAM118AQ9NWS6 357 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 PPP1R14DQ9NXH3 145 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 MAP3K20Q9NYL2 800 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 HCN3Q9P1Z3 774 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 AASSQ9UDR5 926 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 CAMK2AQ9UQM7 478 aa3.06□□□□□ -1.92
CCDC88A-212ENST00000474059 COL5A2P05997 1499 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 C17orf113A0A1B0GUU1 675 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 PABPN1LA6NDY0 278 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 DVL1O14640 695 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 CEP104O60308 925 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 TMEM63AO94886 807 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 IGLV1-44P01699 117 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 G6PDP11413 515 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 SLC2A4P14672 509 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 RRM1P23921 792 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 EPHA8P29322 1005 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 CHRNB4P30926 498 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 MAN1A1P33908 653 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 CLCNKAP51800 687 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 DVL1P1P54792 670 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 HNRNPH2P55795 449 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 UFM1P61960 85 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 EFNB1P98172 346 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 PTP4A2Q12974 167 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 SGO1Q5FBB7 561 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 HYIQ5T013 277 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 GPATCH4Q5T3I0 446 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 HAUS3Q68CZ6 603 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 LRRC8EQ6NSJ5 796 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 RGMBQ6NW40 437 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 ATF7IPQ6VMQ6 1270 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 TBC1D26Q86UD7 250 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 CPXM2Q8N436 756 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 AGBL3Q8NEM8 1001 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 TDRD7Q8NHU6 1098 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 NFKBIDQ8NI38 313 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 KCNG4Q8TDN1 519 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 ZNF653Q96CK0 615 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 ZNF354BQ96LW1 612 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 ZNF570Q96NI8 536 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 SYT17Q9BSW7 474 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 SLC25A18Q9H1K4 315 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 FKRPQ9H9S5 495 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 MMP25Q9NPA2 562 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 OLA1Q9NTK5 396 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 IL1RAPL1Q9NZN1 696 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 TMEM181Q9P2C4 612 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 ORC3Q9UBD5 711 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 PEMTQ9UBM1 199 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 AMDHD2Q9Y303 409 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 STON1Q9Y6Q2 735 aa3.05□□□□□ -1.92
CCDC88A-212ENST00000474059 RUSC2Q8N2Y8 1516 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 KDM3AQ9Y4C1 1321 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 A0A087X0M5 115 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 A0A1B0GX30 115 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 HHLA1C9JL84 531 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 TNFSF14O43557 240 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 PRKNO60260 465 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 USO1O60763 962 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 SRSF10O75494 262 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 BAIAP3O94812 1187 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 DDX58O95786 925 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 IGHV4-39P01824 125 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 UBL4AP11441 157 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 COX7A2P14406 83 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 HOXA1P49639 335 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 CCR9P51686 369 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 EIF5P55010 431 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 KRT32Q14532 448 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 CTF1Q16619 201 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 SLC9B1Q4ZJI4 515 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 ZNF667Q5HYK9 610 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 PDSS1Q5T2R2 415 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 WDR78Q5VTH9 848 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 CCDC30Q5VVM6 783 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 SLC27A1Q6PCB7 646 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 INO80CQ6PI98 192 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 CLEC4GQ6UXB4 293 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 RNF113BQ8IZP6 322 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 WDR20Q8TBZ3 569 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 FAM222BQ8WU58 562 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 TAAR8Q969N4 342 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 KIF1BPQ96EK5 621 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms