RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 XRCC4Q13426 336 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 TBC1D25Q3MII6 688 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 CCDC181Q5TID7 509 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 GALNT13Q8IUC8 556 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 NAGSQ8N159 534 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 Q8N9G6 341 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-203ENST00000474056 PATE1Q8WXA2 126 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 MRGPRX2Q96LB1 330 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 FCRL5Q96RD9 977 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 GFM1Q96RP9 751 aaKnown RBP17.8■□□□□ 0.44
UPF3A-203ENST00000474056 FAM118BQ9BPY3 351 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 SPATA16Q9BXB7 569 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 GPR63Q9BZJ6 419 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 LRRN3Q9H3W5 708 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 POLR1BQ9H9Y6 1135 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 LRIT1Q9P2V4 623 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 APPL1Q9UKG1 709 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 PACSIN2Q9UNF0 486 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-203ENST00000474056 SATB2Q9UPW6 733 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 EFR3BQ9Y2G0 817 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 PTPRQQ9UMZ3 2332 aa17.8■□□□□ 0.44
UPF3A-203ENST00000474056 A0A087WV48 116 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 LOC285095A0A1B0GVY8 99 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 PMS2P1A4D2B8 440 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 D6RAR5 112 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 ECEL1O95672 775 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 PYGMP11217 842 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 CHRNA4P43681 627 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 LSSP48449 732 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 DCDC1P59894 354 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 COL28A1Q2UY09 1125 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 CCDC70Q6NSX1 233 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 SPRED1Q7Z699 444 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 B3GNT8Q7Z7M8 397 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 C17orf82Q86X59 251 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-203ENST00000474056 CCNJLQ8IV13 435 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 SLC25A41Q8N5S1 370 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 SNIP1Q8TAD8 396 aaKnown RBP17.79■□□□□ 0.44
UPF3A-203ENST00000474056 ARFGAP3Q9NP61 516 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 VPS18Q9P253 973 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 NFKBIL1Q9UBC1 381 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-203ENST00000474056 RSPH14Q9UHP6 348 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 AMFRQ9UKV5 643 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 LHX6Q9UPM6 363 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 PRKAB1Q9Y478 270 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 ZFYVE26Q68DK2 2539 aa17.79■□□□□ 0.44
UPF3A-203ENST00000474056 NUDT21O43809 227 aaKnown RBP17.78■□□□□ 0.44
UPF3A-203ENST00000474056 FTCDO95954 541 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 PNLIPP16233 465 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 BPIP17213 487 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 ACTN2P35609 894 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 EIF2S3P41091 472 aaKnown RBP17.78■□□□□ 0.44
UPF3A-203ENST00000474056 KIF5AQ12840 1032 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 ZNF569Q5MCW4 686 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 ZNF648Q5T619 568 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-203ENST00000474056 PEX26Q7Z412 305 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 ARL14Q8N4G2 192 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 IPMKQ8NFU5 416 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 FGF11Q92914 225 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 GRAMD1AQ96CP6 724 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 PRR11Q96HE9 360 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-203ENST00000474056 GORASP1Q9BQQ3 440 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 BPIFA1Q9NP55 256 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 ZNHIT2Q9UHR6 403 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 ATXN7L1Q9ULK2 861 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-203ENST00000474056 CAPN6Q9Y6Q1 641 aa17.78■□□□□ 0.44
UPF3A-203ENST00000474056 DDX3YO15523 660 aaKnown RBP17.77■□□□□ 0.44
UPF3A-203ENST00000474056 DXOO77932 396 aaKnown RBP17.77■□□□□ 0.44
UPF3A-203ENST00000474056 RBP3P10745 1247 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 EIF3EP60228 445 aaKnown RBP17.77■□□□□ 0.44
UPF3A-203ENST00000474056 MPP3Q13368 585 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 SLC1A5Q15758 541 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 SIRPB2Q5JXA9 342 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 TRAM1L1Q8N609 369 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 ZSCAN5AQ9BUG6 496 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 FOXP3Q9BZS1 431 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 GBA3Q9H227 469 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 ASCL3Q9NQ33 180 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 RAD18Q9NS91 495 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 ATXN10Q9UBB4 475 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 TRHDEQ9UKU6 1024 aa17.77■□□□□ 0.44
UPF3A-203ENST00000474056 NUAK1O60285 661 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 SLC25A14O95258 325 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-203ENST00000474056 EPOP01588 193 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 ITPKBP27987 946 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 CETN2P41208 172 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 B4GALNT1Q00973 533 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 LRP8Q14114 963 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 FOXR1Q6PIV2 292 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 CHST15Q7LFX5 561 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-203ENST00000474056 TMPRSS9Q7Z410 1059 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 ZNF438Q7Z4V0 828 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 CDKL3Q8IVW4 592 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-203ENST00000474056 SYCE1Q8N0S2 351 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 LSMEM2Q8N112 164 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 TXLNBQ8N3L3 684 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 TTC30BQ8N4P2 665 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 WDR36Q8NI36 951 aaKnown RBP17.76■□□□□ 0.43
UPF3A-203ENST00000474056 GLYATL1Q969I3 302 aa17.76■□□□□ 0.43
UPF3A-203ENST00000474056 LIN37Q96GY3 246 aaPredicted RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms