RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 LRRK2Q5S007 2527 aa8.02□□□□□ -1.13
USP48-207ENST00000471752 C1orf232A0A0U1RR37 186 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 LRRD1A4D1F6 860 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 A6NCN8 305 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 CAPN8A6NHC0 703 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 RHPN2P1A8MT19 583 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 TK2O00142 265 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 NVLO15381 856 aaKnown RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 GPR39O43194 453 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 BUD23O43709 281 aaKnown RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 SNX2O60749 519 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 ASMTLO95671 621 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 MT-CYBP00156 380 aaPredicted RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 JMJD7P0C870 316 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 PNLIPP16233 465 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 PECAM1P16284 738 aaPredicted RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 ZNF8P17098 575 aaPredicted RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 DESP17661 470 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 KELP23276 732 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 CD68P34810 354 aaPredicted RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 SPINT3P49223 89 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 ILF3Q12906 894 aaKnown RBP eCLIP8.01□□□□□ -1.13
USP48-207ENST00000471752 NFATC2Q13469 925 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 OLIG2Q13516 323 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 PTPRCAPQ14761 206 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 NR1D2Q14995 579 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 CLCA4Q14CN2 919 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 IFI16Q16666 785 aaKnown RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 COLEC12Q5KU26 742 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 SNAP47Q5SQN1 464 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 ALS2CLQ60I27 953 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 SLC9A4Q6AI14 798 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 USP45Q70EL2 814 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 PIM3Q86V86 326 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 VSTM4Q8IW00 320 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 CCDC13Q8IYE1 715 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 OR8K1Q8NGG5 319 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 ATL2Q8NHH9 583 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 GRAMD1AQ96CP6 724 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 CCDC97Q96F63 343 aaPredicted RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 AGAP3Q96P47 875 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 OR2M4Q96R27 311 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 NRTNQ99748 197 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 ZNF670Q9BS34 389 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 TBC1D10AQ9BXI6 508 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 GSDMCQ9BYG8 508 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 POLR1EQ9GZS1 481 aaKnown RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 OR2AG1Q9H205 316 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 NHEJ1Q9H9Q4 299 aaPredicted RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 APMAPQ9HDC9 416 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 BPIFA1Q9NP55 256 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 EVA1BQ9NVM1 165 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 RCOR3Q9P2K3 495 aaPredicted RBP8.01□□□□□ -1.13
USP48-207ENST00000471752 ATXN10Q9UBB4 475 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 B3GALT1Q9Y5Z6 326 aa8.01□□□□□ -1.13
USP48-207ENST00000471752 ANKRD66B4E2M5 251 aa8□□□□□ -1.13
USP48-207ENST00000471752 ERVH48-1M5A8F1 160 aa8□□□□□ -1.13
USP48-207ENST00000471752 PSMD11O00231 422 aa8□□□□□ -1.13
USP48-207ENST00000471752 CPNE6O95741 557 aa8□□□□□ -1.13
USP48-207ENST00000471752 SLC4A1P02730 911 aa8□□□□□ -1.13
USP48-207ENST00000471752 H2AFZP0C0S5 128 aa8□□□□□ -1.13
USP48-207ENST00000471752 TMEM253P0C7T8 217 aa8□□□□□ -1.13
USP48-207ENST00000471752 FAM87AP0C7U9 286 aa8□□□□□ -1.13
USP48-207ENST00000471752 ACP5P13686 325 aa8□□□□□ -1.13
USP48-207ENST00000471752 ITGB6P18564 788 aa8□□□□□ -1.13
USP48-207ENST00000471752 COMTP21964 271 aa8□□□□□ -1.13
USP48-207ENST00000471752 TEAD1P28347 426 aa8□□□□□ -1.13
USP48-207ENST00000471752 SERPINB6P35237 376 aa8□□□□□ -1.13
USP48-207ENST00000471752 CHRNA4P43681 627 aa8□□□□□ -1.13
USP48-207ENST00000471752 LIMK2P53671 638 aa8□□□□□ -1.13
USP48-207ENST00000471752 EPHB1P54762 984 aa8□□□□□ -1.13
USP48-207ENST00000471752 IFI35P80217 286 aaPredicted RBP8□□□□□ -1.13
USP48-207ENST00000471752 PPIDQ08752 370 aaKnown RBP8□□□□□ -1.13
USP48-207ENST00000471752 AP1B1Q10567 949 aa8□□□□□ -1.13
USP48-207ENST00000471752 WASHC5Q12768 1159 aa8□□□□□ -1.13
USP48-207ENST00000471752 TBX2Q13207 712 aaPredicted RBP8□□□□□ -1.13
USP48-207ENST00000471752 PDK2Q15119 407 aa8□□□□□ -1.13
USP48-207ENST00000471752 PCSK7Q16549 785 aa8□□□□□ -1.13
USP48-207ENST00000471752 TBR1Q16650 682 aa8□□□□□ -1.13
USP48-207ENST00000471752 HADHQ16836 314 aaKnown RBP8□□□□□ -1.13
USP48-207ENST00000471752 PLA2G4EQ3MJ16 856 aa8□□□□□ -1.13
USP48-207ENST00000471752 MAP9Q49MG5 647 aa8□□□□□ -1.13
USP48-207ENST00000471752 RALGPS1Q5JS13 557 aa8□□□□□ -1.13
USP48-207ENST00000471752 CHCHD2P9Q5T1J5 151 aaPredicted RBP8□□□□□ -1.13
USP48-207ENST00000471752 HENMT1Q5T8I9 393 aaKnown RBP8□□□□□ -1.13
USP48-207ENST00000471752 BROXQ5VW32 411 aa8□□□□□ -1.13
USP48-207ENST00000471752 IYDQ6PHW0 289 aa8□□□□□ -1.13
USP48-207ENST00000471752 H2AFVQ71UI9 128 aa8□□□□□ -1.13
USP48-207ENST00000471752 ZNF765Q7L2R6 523 aa8□□□□□ -1.13
USP48-207ENST00000471752 TIPARPQ7Z3E1 657 aaKnown RBP8□□□□□ -1.13
USP48-207ENST00000471752 ADGRG6Q86SQ4 1221 aa8□□□□□ -1.13
USP48-207ENST00000471752 ZNF605Q86T29 641 aa8□□□□□ -1.13
USP48-207ENST00000471752 ZNF547Q8IVP9 402 aa8□□□□□ -1.13
USP48-207ENST00000471752 UNC5BQ8IZJ1 945 aa8□□□□□ -1.13
USP48-207ENST00000471752 SFRP1Q8N474 314 aa8□□□□□ -1.13
USP48-207ENST00000471752 BMPERQ8N8U9 685 aa8□□□□□ -1.13
USP48-207ENST00000471752 OR6C4Q8NGE1 309 aa8□□□□□ -1.13
USP48-207ENST00000471752 WDR48Q8TAF3 677 aa8□□□□□ -1.13
USP48-207ENST00000471752 NSMCE1Q8WV22 266 aa8□□□□□ -1.13
USP48-207ENST00000471752 ART4Q93070 314 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms