RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 ARRDC2Q8TBH0 407 aa17.39■□□□□ 0.37
COL7A1-206ENST00000466591 PTCD2Q8WV60 388 aaKnown RBP17.39■□□□□ 0.37
COL7A1-206ENST00000466591 SH3KBP1Q96B97 665 aa17.39■□□□□ 0.37
COL7A1-206ENST00000466591 RNF25Q96BH1 459 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-206ENST00000466591 FAF2Q96CS3 445 aa17.39■□□□□ 0.37
COL7A1-206ENST00000466591 GPR63Q9BZJ6 419 aa17.39■□□□□ 0.37
COL7A1-206ENST00000466591 OSGEPL1Q9H4B0 414 aa17.39■□□□□ 0.37
COL7A1-206ENST00000466591 NHEJ1Q9H9Q4 299 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-206ENST00000466591 ZFYVE1Q9HBF4 777 aa17.39■□□□□ 0.37
COL7A1-206ENST00000466591 RAD18Q9NS91 495 aa17.39■□□□□ 0.37
COL7A1-206ENST00000466591 DDX56Q9NY93 547 aaKnown RBP17.39■□□□□ 0.37
COL7A1-206ENST00000466591 VPS18Q9P253 973 aa17.39■□□□□ 0.37
COL7A1-206ENST00000466591 PTPRQQ9UMZ3 2332 aa17.39■□□□□ 0.37
COL7A1-206ENST00000466591 BAHCC1Q9P281 2608 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 KIF26BQ2KJY2 2108 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 IGHV5-10-1A0A0J9YXX1 117 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 RGSL1A5PLK6 1076 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 SOD1P00441 154 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 MPSTP25325 297 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 ETV5P41161 510 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 IFI35P80217 286 aaPredicted RBP17.38■□□□□ 0.37
COL7A1-206ENST00000466591 HHEXQ03014 270 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 NFATC2Q13469 925 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 TRA2AQ13595 282 aaKnown RBP eCLIP17.38■□□□□ 0.37
COL7A1-206ENST00000466591 C16orf72Q14CZ0 275 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 QPCTQ16769 361 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 ZFAND4Q86XD8 727 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 ZNF761Q86XN6 746 aaPredicted RBP17.38■□□□□ 0.37
COL7A1-206ENST00000466591 CNGA4Q8IV77 575 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 RHOT1Q8IXI2 618 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 RNF214Q8ND24 703 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 SLC37A2Q8TED4 501 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 SGF29Q96ES7 293 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 RMI1Q9H9A7 625 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 KCNK6Q9Y257 313 aa17.38■□□□□ 0.37
COL7A1-206ENST00000466591 STMND1H3BQB6 276 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 PPM1DO15297 605 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 MFAP3LO75121 409 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 C1QL1O75973 258 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 SLC25A14O95258 325 aaPredicted RBP17.37■□□□□ 0.37
COL7A1-206ENST00000466591 CD1CP29017 333 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 SLC1A1P43005 524 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 LIMK2P53671 638 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 SLC10A2Q12908 348 aaPredicted RBP17.37■□□□□ 0.37
COL7A1-206ENST00000466591 ZBTB17Q13105 803 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 LYSMD3Q7Z3D4 306 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 TMPRSS9Q7Z410 1059 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 SLC9B2Q86UD5 537 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 VASH2Q86V25 355 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 TRIM48Q8IWZ4 208 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 IL22RA1Q8N6P7 574 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 OR4D9Q8NGE8 314 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 JPH3Q8WXH2 748 aaPredicted RBP17.37■□□□□ 0.37
COL7A1-206ENST00000466591 TAAR9Q96RI9 348 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 LYSMD1Q96S90 227 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 HERPUD2Q9BSE4 406 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 BRD8Q9H0E9 1235 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 FOXJ2Q9P0K8 574 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 NENFQ9UMX5 172 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 SHOC2Q9UQ13 582 aa17.37■□□□□ 0.37
COL7A1-206ENST00000466591 IGHV1OR21-1A0A087WYE8 117 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 A8MU76 341 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 ZNF487B1APH4 448 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 GRID2O43424 1007 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 PIRTP0C851 137 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 CCL4P13236 92 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 TFDP2Q14188 446 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 NR1D2Q14995 579 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 INSCQ1MX18 579 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 KAZNQ674X7 775 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 NPNTQ6UXI9 565 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 C17orf82Q86X59 251 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-206ENST00000466591 CCDC50Q8IVM0 306 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 VSTM4Q8IW00 320 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 PLD5Q8N7P1 536 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 AVL9Q8NBF6 648 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 GDAP1Q8TB36 358 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 NCSTNQ92542 709 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 MED8Q96G25 268 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 SCARF2Q96GP6 870 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-206ENST00000466591 COX14Q96I36 57 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 CHP1Q99653 195 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 ZSCAN5AQ9BUG6 496 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-206ENST00000466591 SLC39A1Q9NY26 324 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 ACSL6Q9UKU0 697 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 HEMK1Q9Y5R4 338 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-206ENST00000466591 LOC400499M0QZD8 3231 aa17.36■□□□□ 0.37
COL7A1-206ENST00000466591 UNC13CQ8NB66 2214 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 A0A0A6YYK5 440 aaPredicted RBP17.35■□□□□ 0.37
COL7A1-206ENST00000466591 EFCAB7A8K855 629 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 C9orf172C9J069 976 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 AKR1B15C9JRZ8 316 aaPredicted RBP17.35■□□□□ 0.37
COL7A1-206ENST00000466591 EFSO43281 561 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 PRLP01236 227 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 FASLGP48023 281 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 CDK18Q07002 472 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 GTF2H3Q13889 308 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 DCAF12Q5T6F0 453 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 HENMT1Q5T8I9 393 aaKnown RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms