RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 LILRB3O75022 631 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 GUCY1B2O75343 617 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 POP4O95707 220 aaKnown RBP7.64□□□□□ -1.19
USP54-210ENST00000466048 IL1BP01584 269 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 ABCB1P08183 1280 aaPredicted RBP7.64□□□□□ -1.19
USP54-210ENST00000466048 CTSEP14091 401 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 MSH3P20585 1137 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 IL12AP29459 219 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 RAB25P57735 213 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 NCALDP61601 193 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 IL10RBQ08334 325 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 SETMARQ53H47 684 aaPredicted RBP7.64□□□□□ -1.19
USP54-210ENST00000466048 SPANXN2Q5MJ10 180 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 MANEALQ5VSG8 457 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 PACS1Q6VY07 963 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 ZNF783Q6ZMS7 281 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 MRPL43Q8N983 215 aaKnown RBP7.64□□□□□ -1.19
USP54-210ENST00000466048 TSPAN14Q8NG11 270 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 OR52K1Q8NGK4 314 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 BLOC1S5Q8TDH9 187 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 CCDC126Q96EE4 140 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 OXNAD1Q96HP4 312 aaPredicted RBP7.64□□□□□ -1.19
USP54-210ENST00000466048 TRIM45Q9H8W5 580 aaPredicted RBP7.64□□□□□ -1.19
USP54-210ENST00000466048 NMRK1Q9NWW6 199 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 MARCH5Q9NX47 278 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 MARCOQ9UEW3 520 aaPredicted RBP7.64□□□□□ -1.19
USP54-210ENST00000466048 MYO9BQ13459 2157 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 PATJQ8NI35 1801 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 A0A1W2PPM1 405 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 A0A1W2PRU2 124 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 CENPXA8MT69 81 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 TGDSO95455 350 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 ADH5P11766 374 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 FASP25445 335 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 NEK3P51956 506 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 CDK18Q07002 472 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 SPDYAQ5MJ70 313 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 SLC8B1Q6J4K2 584 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 IKBIPQ70UQ0 350 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 DHDDSQ86SQ9 333 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 AHI1Q8N157 1196 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 SLC25A41Q8N5S1 370 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 BEND7Q8N7W2 519 aaPredicted RBP7.64□□□□□ -1.19
USP54-210ENST00000466048 MINDY2Q8NBR6 621 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 SETD9Q8NE22 299 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 GRPEL2Q8TAA5 225 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 TUBGCP5Q96RT8 1024 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 MLPHQ9BV36 600 aaPredicted RBP7.64□□□□□ -1.19
USP54-210ENST00000466048 OSBPL7Q9BZF2 842 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 GPR62Q9BZJ7 368 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 TRIM8Q9BZR9 551 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 ZNF556Q9HAH1 456 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 TMEM165Q9HC07 324 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 LATS2Q9NRM7 1088 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 TMPRSS4Q9NRS4 437 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 SNX13Q9Y5W8 968 aa7.64□□□□□ -1.19
USP54-210ENST00000466048 LOC100653049A0A140TA62 436 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 CACNB4O00305 520 aaPredicted RBP7.63□□□□□ -1.19
USP54-210ENST00000466048 TEX28O15482 410 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 MSI1O43347 362 aaKnown RBP7.63□□□□□ -1.19
USP54-210ENST00000466048 EDF1O60869 148 aaKnown RBP7.63□□□□□ -1.19
USP54-210ENST00000466048 KRT34O76011 436 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 RHOP08100 348 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 OR56A5P0C7T3 313 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 EIF4EBP2Q13542 120 aaPredicted RBP7.63□□□□□ -1.19
USP54-210ENST00000466048 NR1D2Q14995 579 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 HIST2H2ACQ16777 129 aaPredicted RBP7.63□□□□□ -1.19
USP54-210ENST00000466048 TIMM50Q3ZCQ8 353 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 HIST2H2AA3Q6FI13 130 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 ZNF534Q76KX8 674 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 KRT73Q86Y46 540 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 BBS7Q8IWZ6 715 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 TSTD1Q8NFU3 115 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 CAPSLQ8WWF8 208 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 ERLEC1Q96DZ1 483 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 SLC39A8Q9C0K1 460 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 NMUR1Q9HB89 426 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 TMEM30AQ9NV96 361 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 TRMT6Q9UJA5 497 aaKnown RBP7.63□□□□□ -1.19
USP54-210ENST00000466048 BTBD3Q9Y2F9 522 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 GPC6Q9Y625 555 aaPredicted RBP7.63□□□□□ -1.19
USP54-210ENST00000466048 CLOCKO15516 846 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 KATNA1O75449 491 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 SMNDC1O75940 238 aaKnown RBP eCLIP7.63□□□□□ -1.19
USP54-210ENST00000466048 GLP2RO95838 553 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 FGF1P05230 155 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 ME2P23368 584 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 ADRA1DP25100 572 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 NRLP54845 237 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 WDR4P57081 412 aaKnown RBP7.63□□□□□ -1.19
USP54-210ENST00000466048 KCNJ2P63252 427 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 ACOX1Q15067 660 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 SLC14A2Q15849 920 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 QPCTQ16769 361 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 DGKKQ5KSL6 1271 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 KLHL35Q6PF15 583 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 GRASPQ7Z6J2 395 aaPredicted RBP7.63□□□□□ -1.19
USP54-210ENST00000466048 LPCAT1Q8NF37 534 aa7.63□□□□□ -1.19
USP54-210ENST00000466048 POP5Q969H6 163 aaKnown RBP7.63□□□□□ -1.19
USP54-210ENST00000466048 MTERF3Q96E29 417 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms