RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 PCSK7Q16549 785 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 CLPPQ16740 277 aaPredicted RBP12.79□□□□□ -0.36
CHD3-206ENST00000452447 TEX44Q53QW1 395 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 HENMT1Q5T8I9 393 aaKnown RBP12.79□□□□□ -0.36
CHD3-206ENST00000452447 KAZNQ674X7 775 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 B4GALNT4Q76KP1 1039 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 CHST15Q7LFX5 561 aaPredicted RBP12.79□□□□□ -0.36
CHD3-206ENST00000452447 LYSMD3Q7Z3D4 306 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 ZNF438Q7Z4V0 828 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 SLC39A7Q92504 469 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 SPATA16Q9BXB7 569 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 SEMA6CQ9H3T2 930 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 LUC7LQ9NQ29 371 aaKnown RBP12.79□□□□□ -0.36
CHD3-206ENST00000452447 SHOC2Q9UQ13 582 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 ALG6Q9Y672 507 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 COL6A6A6NMZ7 2263 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 PIEZO2Q9H5I5 2752 aa12.79□□□□□ -0.36
CHD3-206ENST00000452447 A0A0A6YYK5 440 aaPredicted RBP12.78□□□□□ -0.36
CHD3-206ENST00000452447 ATXN7O15265 892 aaPredicted RBP12.78□□□□□ -0.36
CHD3-206ENST00000452447 CST8O60676 142 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 SLC4A1P02730 911 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 CDKN2BP42772 138 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 PPM1FP49593 454 aaPredicted RBP12.78□□□□□ -0.36
CHD3-206ENST00000452447 HADHBP55084 474 aaKnown RBP12.78□□□□□ -0.36
CHD3-206ENST00000452447 VAC14Q08AM6 782 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 NR1D2Q14995 579 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 LLGL1Q15334 1064 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 FAM182AQ5T1J6 154 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 TMPRSS9Q7Z410 1059 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 SLITRK4Q8IW52 837 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 TC2NQ8N9U0 490 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 LSM14AQ8ND56 463 aaKnown RBP12.78□□□□□ -0.36
CHD3-206ENST00000452447 TFB1MQ8WVM0 346 aaKnown RBP12.78□□□□□ -0.36
CHD3-206ENST00000452447 P3H4Q92791 437 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 TRIB3Q96RU7 358 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 SRPK1Q96SB4 655 aaKnown RBP12.78□□□□□ -0.36
CHD3-206ENST00000452447 GPR63Q9BZJ6 419 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 ZMYND15Q9H091 742 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 RMI1Q9H9A7 625 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 MAGEE1Q9HCI5 957 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 RAD18Q9NS91 495 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 KCNK4Q9NYG8 393 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 SAE1Q9UBE0 346 aaPredicted RBP12.78□□□□□ -0.36
CHD3-206ENST00000452447 CNOT6Q9ULM6 557 aaKnown RBP12.78□□□□□ -0.36
CHD3-206ENST00000452447 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.78□□□□□ -0.36
CHD3-206ENST00000452447 PRKAB1Q9Y478 270 aa12.78□□□□□ -0.36
CHD3-206ENST00000452447 TRBV23OR9-2A0A075B6M9 112 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 FADS2P1A8MWK0 482 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 TK2O00142 265 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 PPM1DO15297 605 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 NVLO15381 856 aaKnown RBP12.77□□□□□ -0.36
CHD3-206ENST00000452447 DNAJC6O75061 913 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 PMPCBO75439 489 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 ZRANB2O95218 330 aaKnown RBP eCLIP12.77□□□□□ -0.36
CHD3-206ENST00000452447 MT-CYBP00156 380 aaPredicted RBP12.77□□□□□ -0.36
CHD3-206ENST00000452447 PIRTP0C851 137 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 ITIH1P19827 911 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 CYLC1P35663 651 aaPredicted RBP12.77□□□□□ -0.36
CHD3-206ENST00000452447 TNNT3P45378 269 aaPredicted RBP12.77□□□□□ -0.36
CHD3-206ENST00000452447 MAPK10P53779 464 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 SLC14A2Q15849 920 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 TAF1BQ53T94 588 aaPredicted RBP12.77□□□□□ -0.36
CHD3-206ENST00000452447 TFDP3Q5H9I0 405 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 ZNF569Q5MCW4 686 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 TMEM164Q5U3C3 297 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 SPOCD1Q6ZMY3 1216 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 CCDC81Q6ZN84 652 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 CCDC50Q8IVM0 306 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 CCDC170Q8IYT3 715 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 SPATA22Q8NHS9 363 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 TEKT5Q96M29 485 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 WDR24Q96S15 920 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 SLC38A3Q99624 504 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 NUDT22Q9BRQ3 303 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 ZSCAN5AQ9BUG6 496 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 GOLPH3Q9H4A6 298 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 STN1Q9H668 368 aaKnown RBP12.77□□□□□ -0.36
CHD3-206ENST00000452447 GLOD4Q9HC38 313 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 PCDHA13Q9Y5I0 950 aa12.77□□□□□ -0.36
CHD3-206ENST00000452447 OAS3Q9Y6K5 1087 aaKnown RBP12.77□□□□□ -0.36
CHD3-206ENST00000452447 MTSS1O43312 755 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 SLC25A14O95258 325 aaPredicted RBP12.77□□□□□ -0.37
CHD3-206ENST00000452447 LCA5LO95447 670 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 NDST3O95803 873 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 PTPN3P26045 913 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 CD1CP29017 333 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 FASLGP48023 281 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 RHDQ02161 417 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 CLN3Q13286 438 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 PRKD1Q15139 912 aaPredicted RBP12.77□□□□□ -0.37
CHD3-206ENST00000452447 TAZQ16635 292 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 NKAIN2Q5VXU1 208 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 ALS2CLQ60I27 953 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 KATNAL2Q8IYT4 538 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 RCOR2Q8IZ40 523 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 SFRP1Q8N474 314 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 RCBTB1Q8NDN9 531 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 GPR26Q8NDV2 337 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 SLC37A2Q8TED4 501 aa12.77□□□□□ -0.37
CHD3-206ENST00000452447 EID2BQ96D98 161 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms