RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 KPNA5O15131 536 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 F7P08709 466 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-206ENST00000445265 LINGO3P0C6S8 592 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 RHDQ02161 417 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 CPSF6Q16630 551 aaKnown RBP eCLIP16.56■□□□□ 0.243e-9■□□□□ 9
TCOF1-206ENST00000445265 PACRGLQ8N7B6 248 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 SMOQ99835 787 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 TRAF3Q13114 568 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 PLCL1Q15111 1095 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 THAP5Q7Z6K1 395 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 FUBP3Q96I24 572 aaKnown RBP eCLIP16.56■□□□□ 0.24
TCOF1-206ENST00000445265 GIMAP4Q9NUV9 329 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 AHSPQ9NZD4 102 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 RAI2Q9Y5P3 530 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 PNMA8CA0A1B0GUJ8 204 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 TMEM233B4DJY2 109 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 C9JVG2 144 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 ALDH1A2O94788 518 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 ABCB1P08183 1280 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-206ENST00000445265 SLC26A3P40879 764 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 UTP4Q969X6 686 aaKnown RBP16.56■□□□□ 0.24
TCOF1-206ENST00000445265 SLC47A1Q96FL8 570 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 CXorf21Q9HAI6 301 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 A8MX80 341 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 E7ENX8 843 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 LZTS3O60299 673 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-206ENST00000445265 CYP2A6P11509 494 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-206ENST00000445265 PBLDP30039 288 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-206ENST00000445265 MAGEA6P43360 314 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 SNRPD1P62314 119 aaKnown RBP16.56■□□□□ 0.24
TCOF1-206ENST00000445265 TSNQ15631 228 aaKnown RBP16.56■□□□□ 0.24
TCOF1-206ENST00000445265 SLC24A5Q71RS6 500 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 ATL1Q8WXF7 558 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 PKP2Q99959 881 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 GALNT8Q9NY28 637 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 ZNHIT2Q9UHR6 403 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 TLR6Q9Y2C9 796 aa16.56■□□□□ 0.24
TCOF1-206ENST00000445265 TBL1XO60907 577 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 C1DQ13901 141 aaKnown RBP16.55■□□□□ 0.24
TCOF1-206ENST00000445265 STARD3Q14849 445 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 NADK2Q4G0N4 442 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 RAB6CQ53S08 254 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 ZNF605Q86T29 641 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 PNPT1Q8TCS8 783 aaKnown RBP16.55■□□□□ 0.24
TCOF1-206ENST00000445265 EZH1Q92800 747 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-206ENST00000445265 RAB6CQ9H0N0 254 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 CCNB1IP1Q9NPC3 277 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 CD320Q9NPF0 282 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 THRBP10828 461 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 GPC1P35052 558 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 PITRM1Q5JRX3 1037 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 RALGPS2Q86X27 583 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-206ENST00000445265 GIPC3Q8TF64 312 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 NELL1Q92832 810 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 FCRL3Q96P31 734 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-206ENST00000445265 GALK1P51570 392 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 HPCAP84074 193 aa16.55■□□□□ 0.24
TCOF1-206ENST00000445265 ZBED3Q96IU2 234 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-206ENST00000445265 TDRD1Q9BXT4 1180 aaKnown RBP16.55■□□□□ 0.24
TCOF1-206ENST00000445265 ZCCHC2Q9C0B9 1178 aaKnown RBP16.55■□□□□ 0.24
TCOF1-206ENST00000445265 MRM3Q9HC36 420 aaKnown RBP16.55■□□□□ 0.24
TCOF1-206ENST00000445265 SYNDIG1LA6NDD5 238 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 PDZK1P1A8MUH7 402 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 RFXANKO14593 260 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 CTPS1P17812 591 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 DNAJB13P59910 316 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 ZNF792Q3KQV3 632 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 SLC2A13Q96QE2 648 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 C6orf62Q9GZU0 229 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-206ENST00000445265 CNOT6Q9ULM6 557 aaKnown RBP16.54■□□□□ 0.24
TCOF1-206ENST00000445265 FAM220BPB1ANY3 271 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 TRIM24O15164 1050 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 CAPGP40121 348 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 MTHFRP42898 656 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 GSSP48637 474 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 DUSP4Q13115 394 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 FAM151BQ6UXP7 276 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 S100ZQ8WXG8 99 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 COPS8Q99627 209 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 SLC2A6Q9UGQ3 507 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 DDX60LQ5H9U9 1706 aaKnown RBP16.54■□□□□ 0.24
TCOF1-206ENST00000445265 DCLK1O15075 740 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 ACSL4O60488 711 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 MLLT6P55198 1093 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-206ENST00000445265 SMAD3P84022 425 aaKnown RBP16.54■□□□□ 0.24
TCOF1-206ENST00000445265 MSANTD2Q6P1R3 559 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 CANT1Q8WVQ1 401 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 KIAA1551Q9HCM1 1747 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 HNRNPCL2B2RXH8 293 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 INSIG1O15503 277 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 F2P00734 622 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 ESR1P03372 595 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 CKMT2P17540 419 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 GRK4P32298 578 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 EIF2B2P49770 351 aaKnown RBP16.54■□□□□ 0.24
TCOF1-206ENST00000445265 MAPK11Q15759 364 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 TIMM50Q3ZCQ8 353 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 CCNYL2Q5T2Q4 361 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 TSGA13Q96PP4 275 aa16.54■□□□□ 0.24
TCOF1-206ENST00000445265 RBM4BQ9BQ04 359 aaKnown RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms