RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CCDC110Q8TBZ0 833 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 MDM1Q8TC05 714 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 PTCD2Q8WV60 388 aaKnown RBP15.08■□□□□ 0
LIMS3-201ENST00000437679 CCDC74AQ96AQ1 378 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 LRRC45Q96CN5 670 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 NXPE2Q96DL1 559 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 CCDC3Q9BQI4 270 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 FICDQ9BVA6 458 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 GRPEL1Q9HAV7 217 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 TAAR2Q9P1P5 351 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 AURKAO14965 403 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 NOBOXO60393 691 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 SLC25A14O95258 325 aaPredicted RBP15.07■□□□□ 0
LIMS3-201ENST00000437679 ATP1A1P05023 1023 aaKnown RBP15.07■□□□□ 0
LIMS3-201ENST00000437679 BPIP17213 487 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 AK4P27144 223 aaPredicted RBP15.07■□□□□ 0
LIMS3-201ENST00000437679 HMGCLP35914 325 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 CCZ1BP86790 482 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 CCZ1P86791 482 aaPredicted RBP15.07■□□□□ 0
LIMS3-201ENST00000437679 CYP4F3Q08477 520 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 RPS6KA1Q15418 735 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 C14orf28Q4W4Y0 310 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 PYCR3Q53H96 274 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 ZDHHC20Q5W0Z9 365 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 SLC30A9Q6PML9 568 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 ARHGEF18Q6ZSZ5 1173 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 GLT6D1Q7Z4J2 308 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 NRROSQ86YC3 692 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 BLOC1S5Q8TDH9 187 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 ZDHHC1Q8WTX9 485 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 NRSN2Q9GZP1 204 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 SYNDIG1Q9H7V2 258 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 RMI1Q9H9A7 625 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 BPIFA1Q9NP55 256 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 SPATS2LQ9NUQ6 558 aaKnown RBP15.07■□□□□ 0
LIMS3-201ENST00000437679 ZNHIT2Q9UHR6 403 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 OAS3Q9Y6K5 1087 aaKnown RBP15.07■□□□□ 0
LIMS3-201ENST00000437679 AK5Q9Y6K8 562 aa15.07■□□□□ 0
LIMS3-201ENST00000437679 ZFC3H1O60293 1989 aaKnown RBP15.06■□□□□ 0
LIMS3-201ENST00000437679 GOLGA6L3A6NEY3 463 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 C5orf60A6NFR6 353 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 CSO75390 466 aaKnown RBP15.06■□□□□ 0
LIMS3-201ENST00000437679 TCEA3O75764 348 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 AGTP01019 485 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 CAPNS1P04632 268 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 GLB1P16278 677 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 ACTR1BP42025 376 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 ACTR1AP61163 376 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 BIRC2Q13490 618 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 LRP8Q14114 963 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 SPIDRQ14159 915 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 CERCAMQ5T4B2 595 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 MEI1Q5TIA1 1274 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 RBM44Q6ZP01 1051 aaKnown RBP15.06■□□□□ 0
LIMS3-201ENST00000437679 PROSER1Q86XN7 944 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 TTC30BQ8N4P2 665 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 FAM71DQ8N9W8 422 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 GLYATL1Q969I3 302 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 PLEKHG4BQ96PX9 1271 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 CARD9Q9H257 536 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 TRIM39Q9HCM9 518 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 DKK4Q9UBT3 224 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 R3HDM2Q9Y2K5 976 aaKnown RBP15.06■□□□□ 0
LIMS3-201ENST00000437679 PKP3Q9Y446 797 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 UNC13CQ8NB66 2214 aa15.06■□□□□ 0
LIMS3-201ENST00000437679 ANKRD11Q6UB99 2663 aaPredicted RBP15.05■□□□□ 0
LIMS3-201ENST00000437679 TCRBV7S2A1N4TA0A589 114 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 DNAJC6O75061 913 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 PNLIPP16233 465 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 HLTFQ14527 1009 aaKnown RBP eCLIP15.05■□□□□ -0
LIMS3-201ENST00000437679 ISXQ2M1V0 245 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 PARP6Q2NL67 630 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 RANBP10Q6VN20 620 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 SLC13A5Q86YT5 568 aaPredicted RBP15.05■□□□□ -0
LIMS3-201ENST00000437679 PHYKPLQ8IUZ5 450 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 TRIM58Q8NG06 486 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 SLC35B2Q8TB61 432 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 GRAMD1AQ96CP6 724 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 APOL2Q9BQE5 337 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 GORASP1Q9BQQ3 440 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 FRMD8P1Q9BZ68 369 aaPredicted RBP15.05■□□□□ -0
LIMS3-201ENST00000437679 OR2AG1Q9H205 316 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.05■□□□□ -0
LIMS3-201ENST00000437679 IL17CQ9P0M4 197 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 LRIT1Q9P2V4 623 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 ATXN10Q9UBB4 475 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 PPP2R2CQ9Y2T4 447 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 PLEKHM1Q9Y4G2 1056 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 SCN8AQ9UQD0 1980 aa15.05■□□□□ -0
LIMS3-201ENST00000437679 URB1O60287 2271 aaKnown RBP15.04■□□□□ -0
LIMS3-201ENST00000437679 GPR89AB7ZAQ6 455 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 STX7O15400 261 aaKnown RBP15.04■□□□□ -0
LIMS3-201ENST00000437679 GRID2O43424 1007 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 NUDT21O43809 227 aaKnown RBP15.04■□□□□ -0
LIMS3-201ENST00000437679 NUAK1O60285 661 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 USP12O75317 370 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 PPFIA2O75334 1257 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 ECEL1O95672 775 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 GPR89BP0CG08 455 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 ADRA1AP35348 466 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms