RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 NKX2-4Q9H2Z4 354 aa25.55■■□□□ 1.68
CPNE1-216ENST00000437340 TRMT6Q9UJA5 497 aaKnown RBP25.55■■□□□ 1.68
CPNE1-216ENST00000437340 PCDHB1Q9Y5F3 818 aa25.55■■□□□ 1.68
CPNE1-216ENST00000437340 XYLBO75191 536 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 SUPT7LO94864 414 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 MTHFD2P13995 350 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 UGT3A1Q6NUS8 523 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 TAS2R42Q7RTR8 314 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 POU5F2Q8N7G0 328 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 PTGR2Q8N8N7 351 aaPredicted RBP25.54■■□□□ 1.68
CPNE1-216ENST00000437340 CEP70Q8NHQ1 597 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 OSBPL1AQ9BXW6 950 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 P2RY12Q9H244 342 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 TNKS2Q9H2K2 1166 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 MEAF6Q9HAF1 191 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 TBC1D14Q9P2M4 693 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 HSFX4A0A1B0GTS1 333 aaPredicted RBP25.54■■□□□ 1.68
CPNE1-216ENST00000437340 HSFX3A0A1B0GWH4 333 aaPredicted RBP25.54■■□□□ 1.68
CPNE1-216ENST00000437340 CAPN8A6NHC0 703 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 GOLGA8CPA6NN73 597 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 SYCE1LA8MT33 242 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 TMEM233B4DJY2 109 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 SDHDO14521 159 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 OR1I1O60431 355 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 JUNP05412 331 aaKnown RBP25.54■■□□□ 1.68
CPNE1-216ENST00000437340 THRAP10827 490 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 CDKN3Q16667 212 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 TMEM25Q86YD3 366 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 ACTRT2Q8TDY3 377 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 TTC1Q99614 292 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 RTKNQ9BST9 563 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 DCLRE1BQ9H816 532 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 APPL1Q9UKG1 709 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 L3MBTL1Q9Y468 752 aa25.54■■□□□ 1.68
CPNE1-216ENST00000437340 ENTPD5O75356 428 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 EZRP15311 586 aaKnown RBP25.53■■□□□ 1.68
CPNE1-216ENST00000437340 TCF3P15923 654 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 INHBCP55103 352 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 MYLK3Q32MK0 819 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 FUT11Q495W5 492 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 C22orf39Q6P5X5 142 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 NET1Q7Z628 596 aaPredicted RBP25.53■■□□□ 1.68
CPNE1-216ENST00000437340 ULK2Q8IYT8 1036 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 CBARPQ8N350 705 aaPredicted RBP25.53■■□□□ 1.68
CPNE1-216ENST00000437340 RIN3Q8TB24 985 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 IRF7Q92985 503 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 FAM136AQ96C01 138 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 PPP1R36Q96LQ0 422 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 FAM161BQ96MY7 647 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 CPEB1Q9BZB8 566 aaKnown RBP25.53■■□□□ 1.68
CPNE1-216ENST00000437340 NOP53Q9NZM5 478 aaKnown RBP25.53■■□□□ 1.68
CPNE1-216ENST00000437340 SLC25A13Q9UJS0 675 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 RNF112Q9ULX5 631 aa25.53■■□□□ 1.68
CPNE1-216ENST00000437340 C1orf232A0A0U1RR37 186 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 RGSL1A5PLK6 1076 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 UBXN8O00124 270 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 PRMT5O14744 637 aaPredicted RBP25.52■■□□□ 1.68
CPNE1-216ENST00000437340 RPS3P23396 243 aaKnown RBP eCLIP25.52■■□□□ 1.684e-8■■■□□ 18.5
CPNE1-216ENST00000437340 PIK3R1P27986 724 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 HNF1BP35680 557 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 BTKQ06187 659 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 DMC1Q14565 340 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 HERC3Q15034 1050 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 WLSQ5T9L3 541 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 NXNQ6DKJ4 435 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 SNX20Q7Z614 316 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 PCDH20Q8N6Y1 951 aaKnown RBP25.52■■□□□ 1.68
CPNE1-216ENST00000437340 PAF1Q8N7H5 531 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 RP9Q8TA86 221 aaKnown RBP25.52■■□□□ 1.68
CPNE1-216ENST00000437340 CD200R1Q8TD46 325 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 RPL10LQ96L21 214 aaKnown RBP25.52■■□□□ 1.68
CPNE1-216ENST00000437340 LENG8Q96PV6 779 aaPredicted RBP25.52■■□□□ 1.68
CPNE1-216ENST00000437340 THTPAQ9BU02 230 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 TMCO1Q9UM00 188 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 FNDC3AQ9Y2H6 1198 aaKnown RBP25.52■■□□□ 1.68
CPNE1-216ENST00000437340 PPIL1Q9Y3C6 166 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 TRAF6Q9Y4K3 522 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 SEC23IPQ9Y6Y8 1000 aaKnown RBP25.52■■□□□ 1.68
CPNE1-216ENST00000437340 DOCK6Q96HP0 2047 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 CDH23Q9H251 3354 aa25.52■■□□□ 1.68
CPNE1-216ENST00000437340 TNRC18O15417 2968 aaPredicted RBP25.52■■□□□ 1.68
CPNE1-216ENST00000437340 A0A0U1RQS6 177 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 NIPSNAP2O75323 286 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 CIB2O75838 187 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 GKP32189 559 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 CTSOP43234 321 aaPredicted RBP25.51■■□□□ 1.67
CPNE1-216ENST00000437340 PTPN5P54829 565 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 IL2P60568 153 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 ZNF77Q15935 545 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 SLC5A9Q2M3M2 681 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 TRMT5Q32P41 509 aaKnown RBP25.51■■□□□ 1.67
CPNE1-216ENST00000437340 C6orf163Q5TEZ5 329 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 LYPLAL1Q5VWZ2 237 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 ECHDC3Q96DC8 303 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 OTUB2Q96DC9 234 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 BBS2Q9BXC9 721 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 EBF2Q9HAK2 575 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 SPHK2Q9NRA0 654 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 MEI4A8MW99 385 aa25.51■■□□□ 1.67
CPNE1-216ENST00000437340 E5RI56 91 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms