RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 FADDQ13158 208 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PROSER3Q2NL68 480 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PTAR1Q7Z6K3 402 aaPredicted RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 TRIM48Q8IWZ4 208 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 NSUN4Q96CB9 384 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 AP2M1Q96CW1 435 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 TBL1YQ9BQ87 522 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 GPATCH2Q9NW75 528 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 NPAP1Q9NZP6 1156 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 FNDC3AQ9Y2H6 1198 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 ZNF432O94892 652 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PAPSS2O95340 614 aaPredicted RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 SPESP1Q6UW49 350 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ADCK2Q7Z695 626 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 DENND6BQ8NEG7 585 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 SPATA31D1Q6ZQQ2 1576 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 AFDNP55196 1824 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 MYO5BQ9ULV0 1848 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PRAF2O60831 178 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 IL1BP01584 269 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 LCP1P13796 627 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 IMPDH1P20839 514 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 MZF1P28698 734 aaPredicted RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 SRSF11Q05519 484 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 CD47Q08722 323 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 MTM1Q13496 603 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ITGA7Q13683 1181 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ZNF169Q14929 603 aaPredicted RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 LARS2Q15031 903 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 PGS1Q32NB8 556 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 TMEM119Q4V9L6 283 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.16□□□□□ -1.26
VPS53-204ENST00000437048 FKBP1CQ5VVH2 108 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 LMBRD2Q68DH5 695 aaPredicted RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 KLHL35Q6PF15 583 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PET117Q6UWS5 81 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 GALNT13Q8IUC8 556 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ZC3H7AQ8IWR0 971 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 OR51D1Q8NGF3 324 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 SLC38A4Q969I6 547 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 CGREF1Q99674 301 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 TUBB1Q9H4B7 451 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ATP13A3Q9H7F0 1226 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 DNAJC18Q9H819 358 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 CISHQ9NSE2 258 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 DPPA5A6NC42 116 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 TDP2O95551 362 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 FDPSP14324 419 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 NOS2P35228 1153 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 NR4A2P43354 598 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 SLC6A3Q01959 620 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 LCP2Q13094 533 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 KCNA10Q16322 511 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 GARNL3Q5VVW2 1013 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 MAFIPQ8WZ33 124 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PEX13Q92968 403 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 SLC35C1Q96A29 364 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 C1orf109Q9NX04 203 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ZNF282Q9UDV7 671 aaPredicted RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 FOXN1O15353 648 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 DBTP11182 482 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 IQSEC1Q6DN90 963 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ILDR2Q71H61 639 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 YAF2Q8IY57 180 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 CHAC2Q8WUX2 184 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PUS3Q9BZE2 481 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 SHCBP1LQ9BZQ2 653 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 NDUFAF4Q9P032 175 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 CLEC4AQ9UMR7 237 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 LIASO43766 372 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 RAB36O95755 333 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 GRIA4P48058 902 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 NDST1P52848 882 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 MED22Q15528 200 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 HYIQ5T013 277 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ZNF773Q6PK81 442 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 SH3RF1Q7Z6J0 888 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PHACTR4Q8IZ21 702 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 COLGALT1Q8NBJ5 622 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 MTMR8Q96EF0 704 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 SLC45A3Q96JT2 553 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 SAGE1Q9NXZ1 904 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 AFF4Q9UHB7 1163 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 FBXL21Q9UKT6 434 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 BORCS7-ASMTA0A0B4J1R7 106 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 RASGRP1O95267 797 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 HLA-DPB1P04440 258 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 CLUP10909 449 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 KDELR1P24390 212 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 LRRC71Q8N4P6 559 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 CEP295NLQ96MC4 621 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 MROH8Q9H579 483 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 USP29Q9HBJ7 922 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PRAMEF33A0A0G2JMD5 474 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 TEX13CA0A0J9YWL9 993 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PRAMEF10O60809 474 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 RLN1P04808 185 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PTPN1P18031 435 aaKnown RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 LCN1P31025 176 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 IRAK1BP1Q5VVH5 260 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms