RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 KBTBD8Q8NFY9 601 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 BTN2A3PQ96KV6 586 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 TEFMQ96QE5 360 aaKnown RBP15.34■□□□□ 0.05
PTPRF-206ENST00000429895 RIC1Q4ADV7 1423 aa15.34■□□□□ 0.05
PTPRF-206ENST00000429895 E9PAM4 449 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 NFATC1O95644 943 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 FADS2O95864 444 aaKnown RBP15.33■□□□□ 0.05
PTPRF-206ENST00000429895 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.33■□□□□ 0.054e-6■□□□□ 10.3
PTPRF-206ENST00000429895 IRGCQ6NXR0 463 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 RALGPS2Q86X27 583 aaPredicted RBP15.33■□□□□ 0.05
PTPRF-206ENST00000429895 STX12Q86Y82 276 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 ZNF433Q8N7K0 673 aaPredicted RBP15.33■□□□□ 0.05
PTPRF-206ENST00000429895 RNF31Q96EP0 1072 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 PIK3C2BO00750 1634 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 PSMD9O00233 223 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 MTX3Q5HYI7 312 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 ESRP1Q6NXG1 681 aaKnown RBP15.33■□□□□ 0.05
PTPRF-206ENST00000429895 B3GNT6Q6ZMB0 384 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 SNX20Q7Z614 316 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 FAM163AQ96GL9 167 aaPredicted RBP15.33■□□□□ 0.05
PTPRF-206ENST00000429895 ART5Q96L15 291 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 KCTD15Q96SI1 283 aaPredicted RBP15.33■□□□□ 0.05
PTPRF-206ENST00000429895 KCTD5Q9NXV2 234 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 TRAF6Q9Y4K3 522 aa15.33■□□□□ 0.05
PTPRF-206ENST00000429895 FPGTO14772 594 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 PGRMC2O15173 223 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 HOXC12P31275 282 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 RHBDL3P58872 404 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 ABATP80404 500 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 NAE1Q13564 534 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 SMCO1Q147U7 214 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 FBXO22Q8NEZ5 403 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 SETD6Q8TBK2 473 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 TCRBV9S1A1TA0A576 114 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 CASKO14936 926 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 TREHO43280 583 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 C9P02748 559 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 RLN1P04808 185 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 ANPEPP15144 967 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 MPSTP25325 297 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 PDHA2P29803 388 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 SLC5A3P53794 718 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 PPP1R15BQ5SWA1 713 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 TTC27Q6P3X3 843 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 PEX5LQ8IYB4 626 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 KLK6Q92876 244 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 LENG1Q96BZ8 264 aaPredicted RBP15.33■□□□□ 0.04
PTPRF-206ENST00000429895 COX4I2Q96KJ9 171 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 DNAJC11Q9NVH1 559 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 OAS3Q9Y6K5 1087 aaKnown RBP15.33■□□□□ 0.04
PTPRF-206ENST00000429895 A0A0J9YYE9 177 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 TMEM88BA6NKF7 163 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 SLC7A2P52569 658 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 LRRC52Q8N7C0 313 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 FBXO15Q8NCQ5 510 aaPredicted RBP15.33■□□□□ 0.04
PTPRF-206ENST00000429895 C1QTNF1Q9BXJ1 281 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 TMEM27Q9HBJ8 222 aa15.33■□□□□ 0.04
PTPRF-206ENST00000429895 FCF1Q9Y324 198 aaKnown RBP15.33■□□□□ 0.04
PTPRF-206ENST00000429895 CYP3A7-CYP3A51PA0A087WV96 503 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 CYP3A7P24462 503 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 TGFBR2P37173 567 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 SPAM1P38567 509 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 PRKCIP41743 596 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 RABGGTBP53611 331 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 MC1RQ01726 317 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 ZMIZ2Q8NF64 920 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 HEXDCQ8WVB3 486 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 TIFAQ96CG3 184 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 TCF25Q9BQ70 676 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 TBC1D14Q9P2M4 693 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 TIMM22Q9Y584 194 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 A0A075B6Q4 140 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 SMIM35A0A1B0GVV1 85 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 FAM86C2PA6NEL3 165 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 FAM155BO75949 473 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 IL17AQ16552 155 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 MSANTD2Q6P1R3 559 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 BBS12Q6ZW61 710 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 ARCQ7LC44 396 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 PRELID2Q8N945 189 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 SPPL2BQ8TCT7 592 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 TACR2P21452 398 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 CTSKP43235 329 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 ACLYP53396 1101 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 SPDYCQ5MJ68 293 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 RASSF6Q6ZTQ3 369 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 BEND5Q7L4P6 421 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 SMPDL3BQ92485 455 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 PCDHGB3Q9Y5G1 929 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 PXDNQ92626 1479 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 NOS1APO75052 506 aaPredicted RBP15.32■□□□□ 0.04
PTPRF-206ENST00000429895 SASH3O75995 380 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 RYKP34925 604 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 CBX5P45973 191 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 DCBLD1Q8N8Z6 715 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 AGXT2Q9BYV1 514 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 PLGRKTQ9HBL7 147 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 TRIM39Q9HCM9 518 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 CKLFQ9UBR5 152 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 PADI3Q9ULW8 664 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms