RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SP9P0CG40 484 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 GDI1P31150 447 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 RPL26P61254 145 aaKnown RBP14.77□□□□□ -0.04
USP4-203ENST00000415188 CYLC2Q14093 348 aaPredicted RBP14.77□□□□□ -0.04
USP4-203ENST00000415188 CSHL1Q14406 222 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 ZNF460Q14592 562 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 MAPRE2Q15555 327 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 MGAT5BQ3V5L5 792 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 RBM20Q5T481 1227 aaKnown RBP14.77□□□□□ -0.04
USP4-203ENST00000415188 MRNIPQ6NTE8 343 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 SNX32Q86XE0 403 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 MIB1Q86YT6 1006 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 PDZD8Q8NEN9 1154 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 CEP70Q8NHQ1 597 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 DNASE1L2Q92874 299 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 IFT43Q96FT9 208 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 OLFM1Q99784 485 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 NUF2Q9BZD4 464 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 VCXQ9H320 206 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 TRPV4Q9HBA0 871 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 ZBTB26Q9HCK0 441 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 SPATA6Q9NWH7 488 aaPredicted RBP14.77□□□□□ -0.04
USP4-203ENST00000415188 CACNA1IQ9P0X4 2223 aa14.77□□□□□ -0.04
USP4-203ENST00000415188 A6NHS1 94 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 NEMP1O14524 444 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 LDB2O43679 373 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 S1PR4O95977 384 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 PSMC3P17980 439 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 ATF6P18850 670 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 CES1P23141 567 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 EPHA3P29320 983 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 OR1E1P30953 314 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 EPHB1P54762 984 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 INHBCP55103 352 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 MAXP61244 160 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 NFKB2Q00653 900 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 CCNIQ14094 377 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 ZNF852Q6ZMS4 543 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 KDELC2Q7Z4H8 507 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 DHDDSQ86SQ9 333 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 PGAM4Q8N0Y7 254 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 PGBD5Q8N414 524 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 BRSK1Q8TDC3 778 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 GIPC2Q8TF65 315 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 NR1H4Q96RI1 486 aaPredicted RBP14.76□□□□□ -0.05
USP4-203ENST00000415188 SEMA3CQ99985 751 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 OSBPL6Q9BZF3 934 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 WDR55Q9H6Y2 383 aaPredicted RBP14.76□□□□□ -0.05
USP4-203ENST00000415188 PDFQ9HBH1 243 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 SEPT3Q9UH03 358 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 DNMT3LQ9UJW3 386 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 POMPQ9Y244 141 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 FAM186AA6NE01 2351 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 LOC100653049A0A140TA62 436 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 SLC38A8A6NNN8 435 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 A8MT66 165 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 SDHDO14521 159 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 TLR5O60602 858 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 RPP40O75818 363 aaKnown RBP14.76□□□□□ -0.05
USP4-203ENST00000415188 KRT34O76011 436 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 NDST3O95803 873 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 SERPINF2P08697 491 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 CCDC166P0CW27 439 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 FDXRP22570 491 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 GABRR2P28476 465 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 SUOXP51687 545 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 FZD5Q13467 585 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 NADSYN1Q6IA69 706 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 KLHDC10Q6PID8 442 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 BNC2Q6ZN30 1099 aaPredicted RBP14.76□□□□□ -0.05
USP4-203ENST00000415188 CHSY3Q70JA7 882 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 OR6P1Q8NGX9 317 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 AGR3Q8TD06 166 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 IRF7Q92985 503 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 HDAC10Q969S8 669 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 L3HYPDHQ96EM0 354 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 MGME1Q9BQP7 344 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 EFCAB1Q9HAE3 211 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 MEAF6Q9HAF1 191 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 MRPL40Q9NQ50 206 aaKnown RBP14.76□□□□□ -0.05
USP4-203ENST00000415188 UTP6Q9NYH9 597 aaKnown RBP14.76□□□□□ -0.05
USP4-203ENST00000415188 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.76□□□□□ -0.05
USP4-203ENST00000415188 HSFX1Q9UBD0 423 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 PPM1HQ9ULR3 514 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 NDRG2Q9UN36 371 aaKnown RBP14.76□□□□□ -0.05
USP4-203ENST00000415188 ASB3Q9Y575 518 aa14.76□□□□□ -0.05
USP4-203ENST00000415188 AURKAO14965 403 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 ACSL4O60488 711 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 SMIM24O75264 130 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 PDE5AO76074 875 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 BAG2O95816 211 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 TBX18O95935 607 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 IMPDH1P20839 514 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 PSMA3P25788 255 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 SLC11A2P49281 568 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 TUFMP49411 452 aaKnown RBP14.75□□□□□ -0.05
USP4-203ENST00000415188 NUDT2P50583 147 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 ATP4BP51164 291 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 CDH4P55283 916 aa14.75□□□□□ -0.05
USP4-203ENST00000415188 NAA20P61599 178 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms