RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PREBQ9HCU5 417 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 CASS4Q9NQ75 786 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 CUEDC1Q9NWM3 386 aaPredicted RBP9.19□□□□□ -0.94
VPS53-203ENST00000401468 GRHL1Q9NZI5 618 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 UBP1Q9NZI7 540 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 WHRNQ9P202 907 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 GGT7Q9UJ14 662 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 SHOC2Q9UQ13 582 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 CHKBQ9Y259 395 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 ITM2BQ9Y287 266 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 TTLL3Q9Y4R7 772 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 PCDHB11Q9Y5F2 797 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 FADS3Q9Y5Q0 445 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 LAMA5O15230 3695 aa9.19□□□□□ -0.94
VPS53-203ENST00000401468 IGSF10Q6WRI0 2623 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 TCRBV7S3A2A0A539 114 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 LRRC72A6NJI9 287 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 SRRM3A6NNA2 597 aaPredicted RBP9.18□□□□□ -0.94
VPS53-203ENST00000401468 AP3B1O00203 1094 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 PSMD11O00231 422 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 NDC80O14777 642 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 LATO43561 262 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 TSPAN6O43657 245 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 RNGTTO60942 597 aaKnown RBP9.18□□□□□ -0.94
VPS53-203ENST00000401468 TMEM63AO94886 807 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 CPP00450 1065 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 AGTP01019 485 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 APRTP07741 180 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 ZNF30P17039 623 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 ITIH2P19823 946 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 LHCGRP22888 699 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 GPC1P35052 558 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 RPL21P46778 160 aaKnown RBP9.18□□□□□ -0.94
VPS53-203ENST00000401468 CCT8P50990 548 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 TUBB4BP68371 445 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 SEMG2Q02383 582 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 ELP6Q0PNE2 266 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 OLIG2Q13516 323 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 MORF4L2Q15014 288 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 FAXCQ5TGI0 409 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 ANKRD22Q5VYY1 191 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 C8orf74Q6P047 294 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 LRRC8BQ6P9F7 803 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 FBXL19Q6PCT2 694 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 TRIM69Q86WT6 500 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 SPATS2Q86XZ4 545 aaKnown RBP9.18□□□□□ -0.94
VPS53-203ENST00000401468 LRRN4CLQ8ND94 238 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 IPMKQ8NFU5 416 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 OR2T34Q8NGX1 318 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 ASB12Q8WXK4 309 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 SNF8Q96H20 258 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 SRPK1Q96SB4 655 aaKnown RBP9.18□□□□□ -0.94
VPS53-203ENST00000401468 FSD1LQ9BXM9 530 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 FRMD8Q9BZ67 464 aaPredicted RBP9.18□□□□□ -0.94
VPS53-203ENST00000401468 PHACTR1Q9C0D0 580 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 RAB17Q9H0T7 212 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 TRABDQ9H4I3 376 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 PCDH12Q9NPG4 1184 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 DYRK4Q9NR20 520 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 HACD3Q9P035 362 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 NFKBIL1Q9UBC1 381 aaPredicted RBP9.18□□□□□ -0.94
VPS53-203ENST00000401468 RIMKLBQ9ULI2 386 aa9.18□□□□□ -0.94
VPS53-203ENST00000401468 TPX2Q9ULW0 747 aaKnown RBP9.18□□□□□ -0.94
VPS53-203ENST00000401468 PIKFYVEQ9Y2I7 2098 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 A0A1W2PQU0 124 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 A0A1W2PR77 199 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 NPIPB15A6NHN6 443 aaPredicted RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 EFCAB8A8MWE9 144 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 SCAMP1O15126 338 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 CASC3O15234 703 aaKnown RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 FFAR2O15552 330 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 PPFIA2O75334 1257 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 PCDH8O95206 1070 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 GM2AP17900 193 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 NFKBIAP25963 317 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 CD38P28907 300 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 HNF1BP35680 557 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 ADCY8P40145 1251 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 GRIA1P42261 906 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 CHRNA4P43681 627 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 SCTRP47872 440 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 CCR5P51681 352 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 BASP1P80723 227 aaKnown RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 CDH17Q12864 832 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 GALNT3Q14435 633 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 PCSK7Q16549 785 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 KCTD19Q17RG1 926 aaPredicted RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 DNTTIP2Q5QJE6 756 aaKnown RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 KIAA1161Q6NSJ0 714 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 ERAP2Q6P179 960 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 CRTC1Q6UUV9 634 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 LIPIQ6XZB0 460 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 USP45Q70EL2 814 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 TTC7BQ86TV6 843 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 CAND1Q86VP6 1230 aaKnown RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 LURAP1LQ8IV03 231 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 NDUFAF2Q8N183 169 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 TTC30BQ8N4P2 665 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS53-203ENST00000401468 EIF1ADQ8N9N8 165 aaKnown RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms