RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CEP295NLQ96MC4 621 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 GDAP1L1Q96MZ0 367 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 THUMPD2Q9BTF0 503 aaKnown RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 NPLQ9BXD5 320 aaPredicted RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 COQ10BQ9H8M1 238 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 GLRX2Q9NS18 164 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 OLAHQ9NV23 265 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 HAO2Q9NYQ3 351 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 DLGAP2Q9P1A6 1054 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 KLQ9UEF7 1012 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 HAO1Q9UJM8 370 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 STX8Q9UNK0 236 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 SSX2IPQ9Y2D8 614 aa4.14□□□□□ -1.75
HMGB1-204ENST00000399489 WBP11Q9Y2W2 641 aaKnown RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 COPG1Q9Y678 874 aaKnown RBP4.14□□□□□ -1.75
HMGB1-204ENST00000399489 HMGXB3Q12766 1538 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 TTC21BQ7Z4L5 1316 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 LNP1A1A4G5 178 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 DENND3A2RUS2 1198 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 WIPF3A6NGB9 483 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 LRRC53A6NM62 1247 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 HCRTR2O43614 444 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 ELANEP08246 267 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CTPS1P17812 591 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CD72P21854 359 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 MYF6P23409 242 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CD27P26842 260 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 SOX6P35712 828 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CRKLP46109 303 aaKnown RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 GCLCP48506 637 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 PTH2RP49190 550 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CACNA2D1P54289 1103 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 GALCP54803 685 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 HSD11B2P80365 405 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CXCL9Q07325 125 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 GRSF1Q12849 480 aaKnown RBP eCLIP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 SEMA3BQ13214 749 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 GPM6BQ13491 265 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 BYSLQ13895 437 aaKnown RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CBFBQ13951 182 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 AP5B1Q2VPB7 878 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 PCGF3Q3KNV8 242 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 FUT11Q495W5 492 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 AASDHQ4L235 1098 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 AARDQ4LEZ3 155 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 MDH1BQ5I0G3 518 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 C6orf136Q5SQH8 315 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 FAM91A1Q658Y4 838 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 NEK5Q6P3R8 708 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 INTS8Q75QN2 995 aaKnown RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CENPVQ7Z7K6 275 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CLYBLQ8N0X4 340 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 FITM2Q8N6M3 262 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 C11orf44Q8N8P7 122 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 DRAXINQ8NBI3 349 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 TBC1D15Q8TC07 691 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 NSMCE1Q8WV22 266 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 LPGAT1Q92604 370 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 KCNJ9Q92806 393 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CASP10Q92851 521 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 FUBP1Q96AE4 644 aaKnown RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 ARHGEF26Q96DR7 871 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 ZNF396Q96N95 335 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 HAPLN3Q96S86 360 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 PNKPQ96T60 521 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 C17orf80Q9BSJ5 609 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 MOV10L1Q9BXT6 1211 aaKnown RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 MTMR12Q9C0I1 747 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 CCSER1Q9C0I3 900 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 USP29Q9HBJ7 922 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 NGBQ9NPG2 151 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 ERAP1Q9NZ08 941 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 NDRG4Q9ULP0 352 aaKnown RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 TDRKHQ9Y2W6 561 aaKnown RBP4.13□□□□□ -1.75
HMGB1-204ENST00000399489 ACEP12821 1306 aa4.13□□□□□ -1.75
HMGB1-204ENST00000399489 MYADML2A6NDP7 307 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 C17orf100A8MU93 164 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TO15178 435 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PEX1O43933 1283 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ZC3H11AO75152 810 aaKnown RBP eCLIP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 USP12O75317 370 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 E2F6O75461 281 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PRLRP16471 622 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 GPTP24298 496 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PRKAR1BP31321 381 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SFNP31947 248 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SUOXP51687 545 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 NAGLUP54802 743 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SIM1P81133 766 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 DEUP1Q05D60 604 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 GFPT1Q06210 699 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CCDC15Q0P6D6 951 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 IL24Q13007 206 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 BFSP2Q13515 415 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SGCBQ16585 318 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 GXYLT1Q4G148 440 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CXorf66Q5JRM2 361 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 KCNT1Q5JUK3 1230 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 DNTTIP2Q5QJE6 756 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SFMBT2Q5VUG0 894 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms