RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 UBR1Q8IWV7 1749 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 SLC35G6P0C7Q6 338 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 C9orf16Q9BUW7 83 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 FAM83DQ9H4H8 585 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 L2HGDHQ9H9P8 463 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 EGFL7Q9UHF1 273 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CYP3A5P20815 502 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 HNMTP50135 292 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 LRRC38Q5VT99 294 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 SIDT2Q8NBJ9 832 aaKnown RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 GPR21Q99679 349 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 SPAG4Q9NPE6 437 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CHRAC1Q9NRG0 131 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CLN6Q9NWW5 311 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 AXIN1O15169 862 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 INSIG1O15503 277 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 ATP1A4Q13733 1029 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 TEX44Q53QW1 395 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CPTPQ5TA50 214 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 Q8N9G6 341 aaPredicted RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 LHX5Q9H2C1 402 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 KCTD5Q9NXV2 234 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 IL36AQ9UHA7 158 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 LEF1Q9UJU2 399 aaPredicted RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 ACTL7BQ9Y614 415 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 GRIN2DO15399 1336 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 AZIN1O14977 448 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 TBX18O95935 607 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CCNA2P20248 432 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 UGT2B15P54855 530 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 LPCAT2Q7L5N7 544 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 XAGE5Q8WWM1 108 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 TP53INP1Q96A56 240 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 TTC24A2A3L6 582 aaPredicted RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 SAP18O00422 153 aaKnown RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 CLDN4O14493 209 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CLEC4CQ8WTT0 213 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CLEC4DQ8WXI8 215 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 SLC47A1Q96FL8 570 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 TRMT61BQ9BVS5 477 aaKnown RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 RACGAP1Q9H0H5 632 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 RBPJLQ9UBG7 517 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 U3KQV3 271 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 C15orf38-AP3S2A0A0A6YYH1 394 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 UGT2B17O75795 530 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 RECQL5O94762 991 aaPredicted RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 ATP6V1G2O95670 118 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 ITGA2P17301 1181 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CDH5P33151 784 aaPredicted RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 ADRA1BP35368 520 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 ATP13A5Q4VNC0 1218 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 ARSIQ5FYB1 569 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 BEND5Q7L4P6 421 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 ARPINQ7Z6K5 226 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 TAC4Q86UU9 113 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 C12orf66Q96MD2 445 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 EBPLQ9BY08 206 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 OR2AG1Q9H205 316 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 GBA3Q9H227 469 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CCDC177Q9NQR7 707 aaPredicted RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 TPST2O60704 377 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 ALOX12P18054 663 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 RYKP34925 604 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 AUHQ13825 339 aaKnown RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 HECTD2Q5U5R9 776 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 SH3RF1Q7Z6J0 888 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 ALYREFQ86V81 257 aaKnown RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 TIFAQ96CG3 184 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 NIFKQ9BYG3 293 aaKnown RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 SMG9Q9H0W8 520 aaKnown RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 INSL6Q9Y581 213 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CFAP20Q9Y6A4 193 aaKnown RBP11.3□□□□□ -0.6
TTC28-201ENST00000397906 A0A1W2PQ67 120 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 ADH5P11766 374 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 MPP1Q00013 466 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 RBBP4Q09028 425 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 JAZF1Q86VZ6 243 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 MRC1P22897 1456 aa11.3□□□□□ -0.6
TTC28-201ENST00000397906 CD48P09326 243 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 STRADAQ7RTN6 431 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 SERPINA9Q86WD7 417 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 KCNK4Q9NYG8 393 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 SRRDQ9UH36 339 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 SERPINB7O75635 380 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 COX4I1P13073 169 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 NRLP54845 237 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 SRP54P61011 504 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 NR1D2Q14995 579 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 FAM91A1Q658Y4 838 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 DHRSXQ8N5I4 330 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 PCDHB18PQ96TA0 734 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 DDX18Q9NVP1 670 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 POLR3BQ9NW08 1133 aaPredicted RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 PTGFRNQ9P2B2 879 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 ARL5AQ9Y689 179 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 RBMXL2O75526 392 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 TMED10P49755 219 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 CNKSR3Q6P9H4 555 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 SLC30A9Q6PML9 568 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 RHOQP17081 205 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms