RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GLYATL1P3A0A0U1RQE8 302 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 FUCA1P04066 466 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 APRTP07741 180 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 ARSDP51689 593 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 CRYMQ14894 314 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 PPP1R7Q15435 360 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 LONRF1Q17RB8 773 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 PYCR3Q53H96 274 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 TPRG1LQ5T0D9 272 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 TEDDM1Q5T9Z0 273 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 GSTA5Q7RTV2 222 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 CCDC91Q7Z6B0 441 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 ZNF354CQ86Y25 554 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 CILP2Q8IUL8 1156 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 KLHL7Q8IXQ5 586 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 IFT20Q8IY31 132 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 SAP25Q8TEE9 199 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 LPGAT1Q92604 370 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 PDLIM5Q96HC4 596 aaKnown RBP6.95□□□□□ -1.3
LIMA1-202ENST00000394943 BIRC8Q96P09 236 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 SMIM14Q96QK8 99 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 KLK4Q9Y5K2 254 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 U3KQA8 63 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 CDX4O14627 284 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-202ENST00000394943 MGAT1P26572 445 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 ADCY8P40145 1251 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 PTGER3P43115 390 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 CD151P48509 253 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 SEMA3AQ14563 771 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 PTPRRQ15256 657 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 LLGL1Q15334 1064 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 HIF1AQ16665 826 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 UNC5AQ6ZN44 842 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 TIFABQ6ZNK6 161 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 ZNF547Q8IVP9 402 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 RGL4Q8IZJ4 473 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 FBXO25Q8TCJ0 367 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 SLC6A18Q96N87 628 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 AGAP2Q99490 1192 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 FAM167BQ9BTA0 163 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 FAM221BA6H8Z2 402 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 ARHGAP33O14559 1287 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 S1PR4O95977 384 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 NUDT17P0C025 328 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 ERGP11308 486 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 CTPS1P17812 591 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 KELP23276 732 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 NMBRP28336 390 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 DNA2P51530 1060 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 ITKQ08881 620 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 ARHGEF7Q14155 803 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 SPARCL1Q14515 664 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 SLMAPQ14BN4 828 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 ZKSCAN8Q15776 578 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-202ENST00000394943 AARS2Q5JTZ9 985 aaKnown RBP6.95□□□□□ -1.3
LIMA1-202ENST00000394943 CCDC70Q6NSX1 233 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 RFLNAQ6ZTI6 216 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 Q6ZVL8 140 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 CENPUQ71F23 418 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 FSTL5Q8N475 847 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-202ENST00000394943 TTC16Q8NEE8 873 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 GSDMBQ8TAX9 411 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 STAMBPL1Q96FJ0 436 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 DNAJC1Q96KC8 554 aaKnown RBP6.95□□□□□ -1.3
LIMA1-202ENST00000394943 HSPA12BQ96MM6 686 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 HINFPQ9BQA5 517 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 ARFGAP3Q9NP61 516 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 PARD6AQ9NPB6 346 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 UBP1Q9NZI7 540 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 VPS9D1Q9Y2B5 631 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 PCDHB1Q9Y5F3 818 aa6.95□□□□□ -1.3
LIMA1-202ENST00000394943 OAS3Q9Y6K5 1087 aaKnown RBP6.95□□□□□ -1.3
LIMA1-202ENST00000394943 TRIOO75962 3097 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 CCDC162PA2VCL2 907 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 K7ESM1 405 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 GPC4O75487 556 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 ITPKAP23677 461 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 MCM3P25205 808 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 MPLP40238 635 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 CSE1LP55060 971 aaKnown RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 BASP1P80723 227 aaKnown RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PCDH1Q08174 1060 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 ATP13A5Q4VNC0 1218 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PSAPL1Q6NUJ1 521 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 ABRAXAS1Q6UWZ7 409 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PARGQ86W56 976 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PHYKPLQ8IUZ5 450 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 OR4K2Q8NGD2 314 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 OR4L1Q8NH43 312 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 MZB1Q8WU39 189 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 WDR92Q96MX6 357 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 RIOK2Q9BVS4 552 aaKnown RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 CDYLQ9Y232 598 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 ANKRD6Q9Y2G4 727 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PKP3Q9Y446 797 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TRPM6Q9BX84 2022 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 ADAMTS9Q9P2N4 1935 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TBC1D3DA0A087WVF3 549 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TBC1D3IA0A087WXS9 549 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TBC1D3EA0A087X179 549 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms