RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 DIAPH3Q9NSV4 1193 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 SEPT11Q9NVA2 429 aaKnown RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 HAUS2Q9NVX0 235 aa2.16□□□□□ -2.06
VPS13A-206ENST00000376646 FAF1Q9UNN5 650 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-206ENST00000376646 ASPDHA6ND91 283 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 KRTAP9-6A8MVA2 160 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 AP3D1O14617 1153 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 EIF5BO60841 1220 aaKnown RBP2.15□□□□□ -2.06
VPS13A-206ENST00000376646 PTP4A3O75365 173 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 SEC31AO94979 1220 aaKnown RBP2.15□□□□□ -2.06
VPS13A-206ENST00000376646 SERPINB2P05120 415 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 ACADMP11310 421 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 S1PR1P21453 382 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 GPTP24298 496 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 NFKBIAP25963 317 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 CHATP28329 748 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 ARL3P36405 182 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 CPOXP36551 454 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 FMO5P49326 533 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 DRG2P55039 364 aaKnown RBP2.15□□□□□ -2.06
VPS13A-206ENST00000376646 PRKG2Q13237 762 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 MAMLD1Q13495 774 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 PPP2R5BQ15173 497 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 SPATA1Q5VX52 437 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 C1orf87Q8N0U7 546 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 ADSSL1Q8N142 457 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 C11orf65Q8NCR3 313 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 CADM4Q8NFZ8 388 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 USP6NLQ92738 828 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 TIGD1Q96MW7 591 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 TREX2Q9BQ50 279 aaPredicted RBP2.15□□□□□ -2.06
VPS13A-206ENST00000376646 GHITMQ9H3K2 345 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 BPIFA1Q9NP55 256 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 KLHL1Q9NR64 748 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 MKLN1Q9UL63 735 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 OR2W1Q9Y3N9 320 aa2.15□□□□□ -2.06
VPS13A-206ENST00000376646 TMEM202A6NGA9 273 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 TBX6O95947 436 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 HEXAP06865 529 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 MMP2P08253 660 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 PSMA4P25789 261 aaKnown RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 PBX3P40426 434 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 ARL1P40616 181 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 GNAQP50148 359 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 RARSP54136 660 aaKnown RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 NAP1L1P55209 391 aaKnown RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 EIF3BP55884 814 aaKnown RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 SEC61BP60468 96 aaKnown RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 RPL7AP62424 266 aaKnown RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 SORDQ00796 357 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 MEA1Q16626 185 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 KCNT1Q5JUK3 1230 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 CDC73Q6P1J9 531 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 KRBA2Q6ZNG9 492 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 QSOX2Q6ZRP7 698 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 IKBIPQ70UQ0 350 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 SLC46A3Q7Z3Q1 461 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 HAPLN4Q86UW8 402 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 PDILTQ8N807 584 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 HUS1BQ8NHY5 278 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 FTOQ9C0B1 505 aaKnown RBP eCLIP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 GFRA4Q9GZZ7 299 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 PPP1R3EQ9H7J1 279 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 POU2F3Q9UKI9 436 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 INTS6Q9UL03 887 aaKnown RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 CORO1CQ9ULV4 474 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 GPR34Q9UPC5 381 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 FAM96BQ9Y3D0 163 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 KCNE2Q9Y6J6 123 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 RSF1Q96T23 1441 aaPredicted RBP2.15□□□□□ -2.07
VPS13A-206ENST00000376646 KAT6BQ8WYB5 2073 aa2.15□□□□□ -2.07
VPS13A-206ENST00000376646 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 FAM237BA0A1B0GVD1 139 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 K7ENM7 598 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 SEC14L2O76054 403 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 MLYCDO95822 493 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 SCGB1D1O95968 90 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 LAMP2P13473 410 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 RARGP13631 454 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 NR1D1P20393 614 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 BDKRB2P30411 391 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 BSGP35613 385 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 IL15P40933 162 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 HADHAP40939 763 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 CLCNKAP51800 687 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 CLNS1AP54105 237 aaKnown RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 HNRNPH2P55795 449 aaKnown RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 ECT2LQ008S8 904 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 SREBF2Q12772 1141 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 GSTA3Q16772 222 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 ZNF280DQ6N043 979 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 TTI2Q6NXR4 508 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 KCTD8Q6ZWB6 473 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 TTC39CQ8N584 583 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 TMEM116Q8NCL8 245 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 KCNH5Q8NCM2 988 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 BEST2Q8NFU1 509 aa2.14□□□□□ -2.07
VPS13A-206ENST00000376646 CTCFLQ8NI51 663 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-206ENST00000376646 WBP2Q969T9 261 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms