RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 HSPBAP1Q96EW2 488 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 C3orf30Q96M34 536 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 UBL7Q96S82 380 aaPredicted RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.08□□□□□ -1.76
USH2A-202ENST00000366942 EMC3Q9P0I2 261 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 SLC27A5Q9Y2P5 690 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 SNX5Q9Y5X3 404 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 URB1O60287 2271 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 MYO5CQ9NQX4 1742 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 PRAG1Q86YV5 1406 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 LOC105369274A0A096LPK9 316 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 A6NL46 340 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 J3QKU1 62 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TNFSF14O43557 240 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 NDUFA10O95299 355 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TSPAN12O95859 305 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 HNRNPA2B1P22626 353 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 CORO1AP31146 461 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 VIPR1P32241 457 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 UGT1A5P35504 534 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 ECT2LQ008S8 904 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TRAP1Q12931 704 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 SLC13A2Q13183 592 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 CBWD6Q4V339 395 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 CRTC3Q6UUV7 619 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 GLT6D1Q7Z4J2 308 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TECPR1Q7Z6L1 1165 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 PDSS2Q86YH6 399 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 OR4N4Q8N0Y3 316 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 ZNF321PQ8N8H1 164 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 ARL14EPQ8N8R7 260 aaPredicted RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 GBP7Q8N8V2 638 aaPredicted RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 TSPAN14Q8NG11 270 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 CENPTQ96BT3 561 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 APOPT1Q96IL0 206 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 AKR1E2Q96JD6 320 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 NAPGQ99747 312 aaPredicted RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 TUBB6Q9BUF5 446 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 LY9Q9HBG7 655 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 NOD2Q9HC29 1040 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 LZTFL1Q9NQ48 299 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 CNGB3Q9NQW8 809 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TMEM184CQ9NVA4 438 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 DBNLQ9UJU6 430 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 RIMKLBQ9ULI2 386 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 INVSQ9Y283 1065 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 AP3M1Q9Y2T2 418 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TRAV17A0A0B4J275 112 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 LOC102723532A0A0G2JNH3 316 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 C2orf92A0A1B0GVN3 265 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 MAGEB16A2A368 324 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 RCCD1A6NED2 376 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 POTECB2RU33 542 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 KMOO15229 486 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 MPPED1O15442 326 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 WNT11O96014 354 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 UGT2B4P06133 528 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 GLI1P08151 1106 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 SHMT2P34897 504 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 ACADVLP49748 655 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 CCL11P51671 97 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 PMS1P54277 932 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 PRKG2Q13237 762 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TRIM71Q2Q1W2 868 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 LRIT3Q3SXY7 679 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 LEXMQ3ZCV2 418 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 ZCCHC12Q6PEW1 402 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 C3P1Q6ZMU1 363 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TTLL10Q6ZVT0 673 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 LRRTM4Q86VH4 590 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 RASSF3Q86WH2 238 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TCAIMQ8N3R3 496 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 CPB2Q96IY4 423 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 DACH2Q96NX9 599 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 PPP1R10Q96QC0 940 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 EPYCQ99645 322 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 ACBD6Q9BR61 282 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 ASB8Q9H765 288 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 BARX1Q9HBU1 254 aaPredicted RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 TAS2R13Q9NYV9 303 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 MOCS1Q9NZB8 636 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 PCDHGC4Q9Y5F7 938 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 CYP2D7A0A087X1C5 515 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 EEF1E1-BLOC1S5C9J1V9 151 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 E7EQ34 232 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 H7C1Q1 480 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 EEF1E1O43324 174 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 FCGR2AP12318 317 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 DDCP20711 480 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 TCEA1P23193 301 aaKnown RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 SERPINB3P29508 390 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 HOXC13P31276 330 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 IL12RB1P42701 662 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 DNASE1L1P49184 302 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 HOXA4Q00056 320 aaPredicted RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 ST3GAL4Q11206 333 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 LRIF1Q5T3J3 769 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 SLC25A24Q6NUK1 477 aa4.08□□□□□ -1.76
USH2A-202ENST00000366942 KIAA0907Q7Z7F0 614 aaPredicted RBP4.08□□□□□ -1.76
USH2A-202ENST00000366942 TMEM132CQ8N3T6 1108 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms