RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 STX7O15400 261 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 LZTS3O60299 673 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 ZNF217O75362 1048 aa4□□□□□ -1.77
LIG4-201ENST00000356922 TM7SF2O76062 418 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SRP72O76094 671 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 PRAMEF1O95521 474 aa4□□□□□ -1.77
LIG4-201ENST00000356922 AHSGP02765 367 aa4□□□□□ -1.77
LIG4-201ENST00000356922 MC4RP32245 332 aa4□□□□□ -1.77
LIG4-201ENST00000356922 FOXN2P32314 431 aa4□□□□□ -1.77
LIG4-201ENST00000356922 PPM1FP49593 454 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 CTSCP53634 463 aa4□□□□□ -1.77
LIG4-201ENST00000356922 RPS21P63220 83 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 MPP1Q00013 466 aa4□□□□□ -1.77
LIG4-201ENST00000356922 NFATC2Q13469 925 aa4□□□□□ -1.77
LIG4-201ENST00000356922 KBTBD12Q3ZCT8 623 aa4□□□□□ -1.77
LIG4-201ENST00000356922 PMS2CLQ68D20 193 aa4□□□□□ -1.77
LIG4-201ENST00000356922 KIAA0895LQ68EN5 471 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ERAP2Q6P179 960 aa4□□□□□ -1.77
LIG4-201ENST00000356922 PNCKQ6P2M8 343 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ZNF549Q6P9A3 640 aa4□□□□□ -1.77
LIG4-201ENST00000356922 PCGF5Q86SE9 256 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SUMF1Q8NBK3 374 aa4□□□□□ -1.77
LIG4-201ENST00000356922 OR6P1Q8NGX9 317 aa4□□□□□ -1.77
LIG4-201ENST00000356922 CCHCR1Q8TD31 782 aa4□□□□□ -1.77
LIG4-201ENST00000356922 GAB3Q8WWW8 586 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SNX19Q92543 992 aa4□□□□□ -1.77
LIG4-201ENST00000356922 FOXJ1Q92949 421 aa4□□□□□ -1.77
LIG4-201ENST00000356922 RAB7BQ96AH8 199 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SGF29Q96ES7 293 aa4□□□□□ -1.77
LIG4-201ENST00000356922 STAMBPL1Q96FJ0 436 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SERAC1Q96JX3 654 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SLC30A3Q99726 388 aa4□□□□□ -1.77
LIG4-201ENST00000356922 MCMBPQ9BTE3 642 aa4□□□□□ -1.77
LIG4-201ENST00000356922 XAB2Q9HCS7 855 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 RABGEF1Q9UJ41 708 aa4□□□□□ -1.77
LIG4-201ENST00000356922 FBXO4Q9UKT5 387 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SCML1Q9UN30 329 aa4□□□□□ -1.77
LIG4-201ENST00000356922 NCKAP1Q9Y2A7 1128 aa4□□□□□ -1.77
LIG4-201ENST00000356922 PLXND1Q9Y4D7 1925 aa4□□□□□ -1.77
LIG4-201ENST00000356922 FAM237BA0A1B0GVD1 139 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ARL4CP56559 192 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ARHGEF7Q14155 803 aa4□□□□□ -1.77
LIG4-201ENST00000356922 LRRC14Q15048 493 aa4□□□□□ -1.77
LIG4-201ENST00000356922 BEND6Q5SZJ8 279 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 TEDDM1Q5T9Z0 273 aa4□□□□□ -1.77
LIG4-201ENST00000356922 CNSTQ6PJW8 725 aa4□□□□□ -1.77
LIG4-201ENST00000356922 DET1Q7L5Y6 550 aa4□□□□□ -1.77
LIG4-201ENST00000356922 TRIM69Q86WT6 500 aa4□□□□□ -1.77
LIG4-201ENST00000356922 GPR161Q8N6U8 529 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 ZNF398Q8TD17 642 aa4□□□□□ -1.77
LIG4-201ENST00000356922 LKAAEAR1Q8TD35 194 aa4□□□□□ -1.77
LIG4-201ENST00000356922 CXorf40AQ8TE69 158 aa4□□□□□ -1.77
LIG4-201ENST00000356922 FBF1Q8TES7 1133 aa4□□□□□ -1.77
LIG4-201ENST00000356922 PYROXD1Q8WU10 500 aa4□□□□□ -1.77
LIG4-201ENST00000356922 DNASE2BQ8WZ79 361 aa4□□□□□ -1.77
LIG4-201ENST00000356922 TSACCQ96A04 125 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 BIRC8Q96P09 236 aa4□□□□□ -1.77
LIG4-201ENST00000356922 RANBP9Q96S59 729 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SPATA16Q9BXB7 569 aa4□□□□□ -1.77
LIG4-201ENST00000356922 FBRSQ9HAH7 460 aa4□□□□□ -1.77
LIG4-201ENST00000356922 IL21RQ9HBE5 538 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SGK2Q9HBY8 427 aa4□□□□□ -1.77
LIG4-201ENST00000356922 TM9SF3Q9HD45 589 aa4□□□□□ -1.77
LIG4-201ENST00000356922 FAM114A2Q9NRY5 505 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ZNF446Q9NWS9 450 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ZSCAN32Q9NX65 697 aa4□□□□□ -1.77
LIG4-201ENST00000356922 CRYL1Q9Y2S2 319 aa4□□□□□ -1.77
LIG4-201ENST00000356922 TNRC6BQ9UPQ9 1833 aaKnown RBP3.99□□□□□ -1.77
LIG4-201ENST00000356922 CCDC163A0A0D9SF12 145 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 PRAMEF33A0A0G2JMD5 474 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 GLYATL1P3A0A0U1RQE8 302 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 HEATR9A2RTY3 570 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 KRT87PA6NCN2 255 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 C2orf81A6NN90 581 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 DNAJC6O75061 913 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 PPFIA2O75334 1257 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 USP1O94782 785 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 TTC4O95801 387 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 EML2O95834 649 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 S1PR4O95977 384 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 CEACAM5P06731 702 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 SLC1A2P43004 574 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 DHPSP49366 369 aaPredicted RBP3.99□□□□□ -1.77
LIG4-201ENST00000356922 PFN3P60673 137 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 IRX4P78413 519 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 PPARDQ03181 441 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 ELP6Q0PNE2 266 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 CUL1Q13616 776 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 AGERQ15109 404 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 DBN1Q16643 649 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 STEAP4Q687X5 459 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 FBXO38Q6PIJ6 1188 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 PRR23BQ6ZRT6 265 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 Q6ZSR6 202 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 MARK2Q7KZI7 788 aaKnown RBP3.99□□□□□ -1.77
LIG4-201ENST00000356922 HEATR4Q86WZ0 1026 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 CYP4X1Q8N118 509 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 RASGEF1AQ8N9B8 481 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 OR4L1Q8NH43 312 aa3.99□□□□□ -1.77
LIG4-201ENST00000356922 STYXQ8WUJ0 223 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms