RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 MTMR8Q96EF0 704 aa6.15□□□□□ -1.42
VCAN-203ENST00000343200 CCDC3Q9BQI4 270 aa6.15□□□□□ -1.42
VCAN-203ENST00000343200 MCMBPQ9BTE3 642 aa6.15□□□□□ -1.42
VCAN-203ENST00000343200 TMEM184CQ9NVA4 438 aa6.15□□□□□ -1.42
VCAN-203ENST00000343200 ETNK2Q9NVF9 386 aa6.15□□□□□ -1.42
VCAN-203ENST00000343200 TLR6Q9Y2C9 796 aa6.15□□□□□ -1.42
VCAN-203ENST00000343200 ANKDD1BA6NHY2 528 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 L7N2F9 121 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 LATS1O95835 1130 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 KELP23276 732 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 CASRP41180 1078 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 HALP42357 657 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 PSEN1P49768 467 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 CCNG2Q16589 344 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 NOMO2Q5JPE7 1267 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 CYP20A1Q6UW02 462 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 PAMR1Q6UXH9 720 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 CATSPER4Q7RTX7 472 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 TOMM5Q8N4H5 51 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 ALLCQ8N6M5 410 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 C9orf43Q8TAL5 461 aaPredicted RBP6.15□□□□□ -1.43
VCAN-203ENST00000343200 KAT8Q9H7Z6 458 aaKnown RBP6.15□□□□□ -1.43
VCAN-203ENST00000343200 CAPN10Q9HC96 672 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 JPH1Q9HDC5 661 aaPredicted RBP6.15□□□□□ -1.43
VCAN-203ENST00000343200 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.15□□□□□ -1.43
VCAN-203ENST00000343200 TOPBP1Q92547 1522 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 BRCA1P38398 1863 aaKnown RBP6.15□□□□□ -1.43
VCAN-203ENST00000343200 CHADO15335 359 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 ALDH4A1P30038 563 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 ALDH9A1P49189 494 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 SLC12A3P55017 1021 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 CDH13P55290 713 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 MPP7Q5T2T1 576 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 SHC4Q6S5L8 630 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 NEK7Q8TDX7 302 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 PHF21BQ96EK2 531 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 CCDC74BQ96LY2 380 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 RPRD1AQ96P16 312 aaPredicted RBP6.15□□□□□ -1.43
VCAN-203ENST00000343200 GPER1Q99527 375 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 IL22Q9GZX6 179 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 SEMA4AQ9H3S1 761 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 PARP14Q460N5 1801 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 MCIDASD6RGH6 385 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 TIPRLO75663 272 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 MAPK3P27361 379 aaPredicted RBP6.15□□□□□ -1.43
VCAN-203ENST00000343200 SLC25A3Q00325 362 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 RRP1BQ14684 758 aaKnown RBP6.15□□□□□ -1.43
VCAN-203ENST00000343200 FAM199XQ6PEV8 388 aaPredicted RBP6.15□□□□□ -1.43
VCAN-203ENST00000343200 MIB1Q86YT6 1006 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 UBE2E3Q969T4 207 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 COMMD4Q9H0A8 199 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 EBF3Q9H4W6 596 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 LY9Q9HBG7 655 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 SNTG2Q9NY99 539 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 RLFQ13129 1914 aa6.15□□□□□ -1.43
VCAN-203ENST00000343200 OR6C6A6NF89 314 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 FADS2P1A8MWK0 482 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 M0R129 80 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 PTTG1O95997 202 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 HOXB8P17481 243 aaPredicted RBP6.14□□□□□ -1.43
VCAN-203ENST00000343200 SLC2A5P22732 501 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 PPIBP23284 216 aaKnown RBP6.14□□□□□ -1.43
VCAN-203ENST00000343200 LUMP51884 338 aaPredicted RBP6.14□□□□□ -1.43
VCAN-203ENST00000343200 TRIM28Q13263 835 aaKnown RBP6.14□□□□□ -1.43
VCAN-203ENST00000343200 USP30Q70CQ3 517 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 RD3Q7Z3Z2 195 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 FBXO33Q7Z6M2 555 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 OSCARQ8IYS5 282 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 ZNF433Q8N7K0 673 aaPredicted RBP6.14□□□□□ -1.43
VCAN-203ENST00000343200 ZNF709Q8N972 641 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 UPF1Q92900 1129 aaKnown RBP eCLIP6.14□□□□□ -1.43
VCAN-203ENST00000343200 CIB1Q99828 191 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 GPATCH2Q9NW75 528 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 ADAM28Q9UKQ2 775 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 MED14O60244 1454 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 USP32Q8NFA0 1604 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 UBR2Q8IWV8 1755 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 ZNF99A8MXY4 864 aaPredicted RBP6.14□□□□□ -1.43
VCAN-203ENST00000343200 IL2RBP14784 551 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 CYP2A7P20853 494 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 PRDX6P30041 224 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 NTSP30990 170 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 GRIA1P42261 906 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 CCR4P51679 360 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 TLE2Q04725 743 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 TPRG1LQ5T0D9 272 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 ATF7IP2Q5U623 682 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 SLC44A3Q8N4M1 653 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 THRSPQ92748 146 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 ARL11Q969Q4 196 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 CDK5RAP1Q96SZ6 601 aaKnown RBP6.14□□□□□ -1.43
VCAN-203ENST00000343200 NT5C1AQ9BXI3 368 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 GAREM1Q9H706 876 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 MAP10Q9P2G4 905 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 PCYOX1Q9UHG3 505 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 TAF6LQ9Y6J9 622 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.14□□□□□ -1.43
VCAN-203ENST00000343200 VWA8A3KMH1 1905 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 RGPD4Q7Z3J3 1758 aa6.14□□□□□ -1.43
VCAN-203ENST00000343200 TCOF1Q13428 1488 aaKnown RBP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms